Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d08
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   6e-15
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   6e-12
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   3e-09
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)            43   9e-05
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)            43   9e-05
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  43   9e-05
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  41   5e-04
SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)                      40   0.001
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.002
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         33   0.072
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            33   0.12 
SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)                   31   0.29 
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.29 
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  29   1.2  
SB_56018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_52320| Best HMM Match : DEAD (HMM E-Value=0)                        28   3.6  
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)                  27   8.2  
SB_19635| Best HMM Match : Met_10 (HMM E-Value=3.4e-13)                27   8.2  

>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 77.0 bits (181), Expect = 6e-15
 Identities = 35/53 (66%), Positives = 45/53 (84%)
 Frame = -3

Query: 294  PLQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVS 136
            P +++RQTLMFSATFPE+IQ LAG FLN+YLF+ VG VGG ++D+EQ  IEV+
Sbjct: 893  PDKSERQTLMFSATFPEEIQRLAGDFLNDYLFLTVGRVGGTTSDIEQTVIEVT 945


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 66.9 bits (156), Expect = 6e-12
 Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
 Frame = -3

Query: 279 RQTLMFSATFPEDIQHLAGRFLN-NYLFVAVGIVGGASTDVEQIFIEVSFSNLTQPYH 109
           RQTLMFSATFP++IQHLAG FL  +YLF+AVG VGG + D+ Q  I V+ S      H
Sbjct: 662 RQTLMFSATFPDEIQHLAGSFLKPDYLFLAVGRVGGTNLDITQHVITVNGSEKRDKLH 719


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = -3

Query: 279  RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQ 154
            RQTLMFSATFP++IQ LA  FL NY+F+AVG VG  S ++ Q
Sbjct: 1035 RQTLMFSATFPKEIQMLARDFLENYIFLAVGKVGSTSENITQ 1076


>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
          Length = 445

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 23/48 (47%), Positives = 31/48 (64%)
 Frame = -3

Query: 288 QTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFI 145
           +++RQTL+FSAT P+ IQ+ A   L   + V VG  G AS DV Q+ I
Sbjct: 45  KSQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQVLI 92


>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
          Length = 212

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 23/48 (47%), Positives = 31/48 (64%)
 Frame = -3

Query: 288 QTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFI 145
           +++RQTL+FSAT P+ IQ+ A   L   + V VG  G AS DV Q+ I
Sbjct: 45  KSQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQVLI 92


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 18/38 (47%), Positives = 30/38 (78%)
 Frame = -3

Query: 291 LQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVG 178
           ++  RQTLM+SAT+P+++Q LA  FL++Y+ + VG +G
Sbjct: 234 IRPDRQTLMWSATWPKEVQGLAHDFLSDYVHITVGSLG 271


>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = -3

Query: 291 LQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV 139
           L  +RQT++FSAT P  I+ +A R LN  +F++ G     +  V+Q+ + V
Sbjct: 307 LSNRRQTMLFSATIPPSIEAMASRLLNAPVFISAGSPSLPTKAVKQLILWV 357


>SB_37968| Best HMM Match : DEAD (HMM E-Value=3.6)
          Length = 127

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = -3

Query: 300 LYPLQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQ 154
           L  L  KRQ L+FSATF +DI+ LA + L+N L + V     AS  V Q
Sbjct: 28  LTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVLQ 76


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = -3

Query: 291 LQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQ 154
           ++  RQT+MFSATFP  ++ LA + L+  + + VG      +DVEQ
Sbjct: 257 IRPDRQTVMFSATFPRQMEALARKILDKPIEIQVGGRSVVCSDVEQ 302


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 33.5 bits (73), Expect = 0.072
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -3

Query: 279 RQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQ 154
           RQTL++SAT PE ++ LA   + N + + VG  G  +  V+Q
Sbjct: 268 RQTLLWSATLPESLERLARSAVLNPITIQVGPGGLIAPSVQQ 309


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -3

Query: 267 MFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQ 154
           +FSAT    I+  AG  L+N++ V VGI   A+  V+Q
Sbjct: 322 LFSATLSNGIEEWAGLHLDNHVRVTVGIRNSATATVDQ 359


>SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)
          Length = 524

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = -3

Query: 297 YPLQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVSF 133
           Y L     ++M+++  P+   H AG+F + +   +  + GGA TD+E+ FI ++F
Sbjct: 345 YTLPILIMSIMYTSLVPK--LHSAGKFRDEH---STSLHGGAKTDIEKKFIRMAF 394


>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 31.5 bits (68), Expect = 0.29
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -3

Query: 300 LYPLQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVG 187
           L  ++  RQT+M SAT+P  +Q +A +++ + + V VG
Sbjct: 11  LLDIRPDRQTVMTSATWPPGVQRMADQYMTDPVRVFVG 48


>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 279 RQTLMFSATFPEDIQHLAGRFLNNYL 202
           RQT+MF+AT P  ++ LA  +L   L
Sbjct: 263 RQTVMFTATMPPQVERLAKNYLRKKL 288


>SB_56018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 316 KLKLCFISTADEKANFNVFGNIP*RHPTFGW 224
           KLK+C+ S  DE    + FG +  RH T  W
Sbjct: 336 KLKVCYASDIDEGVYADTFGQLV-RHATMQW 365


>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 340

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 309 NCALYPLQTKRQTLMFSATFPEDIQHLAGRFLNNYL 202
           N  +  L ++RQTL++SAT    ++ LA   L +Y+
Sbjct: 218 NAIIENLPSERQTLLYSATQTRSVKDLARLSLQSYV 253


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 270 LMFSATFPEDIQHLAGRFLNNYLFVAVGIVG 178
           L+FSATF + ++HL    L + + V +G +G
Sbjct: 683 LLFSATFKKKVEHLCRDILVDPVRVVIGELG 713


>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -3

Query: 291 LQTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEV 139
           L T  Q ++ SAT P D+  +  +F+ + + + V         ++Q F+ V
Sbjct: 261 LPTSVQVVLLSATMPTDVLEVTNKFMRDVVRILVKREEVTLEGIKQFFVLV 311


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -3

Query: 291 LQTKRQTLMFSATFPEDIQHLA 226
           L +KRQT++FSAT  ++++ LA
Sbjct: 747 LPSKRQTVLFSATQTKNVEDLA 768


>SB_3432| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-28)
          Length = 343

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 278 GKL*CFRQHSLKTSNIWLVVS*III 204
           GK  CF++HSL+  N WLV + + I
Sbjct: 167 GKCFCFQEHSLQL-NTWLVYANVFI 190


>SB_19635| Best HMM Match : Met_10 (HMM E-Value=3.4e-13)
          Length = 564

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 230 KCWMSSGNVAENIKVCLFVCSG 295
           KC  SSGN+ E ++V    C G
Sbjct: 204 KCMFSSGNITEKMRVAKMDCLG 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,866
Number of Sequences: 59808
Number of extensions: 219944
Number of successful extensions: 521
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)