Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d08
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       84   7e-19
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    20   9.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 83.8 bits (198), Expect = 7e-19
 Identities = 38/49 (77%), Positives = 45/49 (91%)
 Frame = -3

Query: 282 KRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVS 136
           +RQTLMFSATFP+++QHLA RFLNNYLF+AVGIVGGA +DVEQ F EV+
Sbjct: 382 ERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVA 430


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 218 KRPAKCWMSSGNVAENIKVCLFVCSGYK 301
           K   KC   S   +   +VCL  C+GY+
Sbjct: 145 KSNLKCDKCSTYQSNGEEVCLENCTGYQ 172


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 326 YIISSCIITKLFTCL 370
           Y+ S C +T L  CL
Sbjct: 161 YLASKCALTTLTDCL 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,763
Number of Sequences: 438
Number of extensions: 2061
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)