Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d07
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)                      31   0.57 
SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.99 
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  

>SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)
          Length = 475

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 204 YITPYKTNYTEQCNYCPV*FLC-FCLSDVIYVGWYRCKEIHLAKLD*YHLPQQQIILKKL 28
           Y +PY   +T      P+ +LC FCL    +V  + C + H+ K + +H P  +I     
Sbjct: 208 YFSPYPQEFTN----LPMVYLCDFCLK---FVKSFHCLKRHMVKCNLFHPPGNEIYRNGT 260

Query: 27  IRSNQLNG 4
           I   +++G
Sbjct: 261 ISFFEIDG 268


>SB_16207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 183 WFCMGLYSSAILAVS--VYSWCRISAC 257
           WFCMG Y + + AV+  V S+CR   C
Sbjct: 109 WFCMGYYVNGLKAVAKRVCSYCRKYGC 135


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 284 GHGGTVRMAASRNPA-PRIYTDCENC*TI*PHTKP 183
           G+GG +  A + N + PR  + CEN   I  HTKP
Sbjct: 409 GYGGPLTCANNENTSIPRCSSRCENVVHIIDHTKP 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,959
Number of Sequences: 59808
Number of extensions: 224224
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)