Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d06
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and glutamine-r...    90   4e-17
UniRef50_A0M2S9 Cluster: Sensor protein; n=1; Gramella forsetii ...    33   7.8  

>UniRef50_Q0ZAL3 Cluster: Splicing factor proline-and
           glutamine-rich; n=4; Endopterygota|Rep: Splicing factor
           proline-and glutamine-rich - Bombyx mori (Silk moth)
          Length = 641

 Score = 90.2 bits (214), Expect = 4e-17
 Identities = 52/115 (45%), Positives = 52/115 (45%)
 Frame = +2

Query: 230 SRFEHNRPXXXXXXXRPSNEKATSQSXXXXXXXXXXXXXXXXXXXXXXXXXXXMETTNVP 409
           SRFEHNRP       RPSNEKATSQS                           METTNVP
Sbjct: 37  SRFEHNRPQQGQGGQRPSNEKATSQSNQPAEKSNQQQQQQNQPKQQSSRPQQKMETTNVP 96

Query: 410 QSTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPVNAPAKSEPQENTDKPKFEP 574
           QSTN                             KPVNAPAKSEPQENTDKPKFEP
Sbjct: 97  QSTNQQQQSQQQPQQQQQIPQQQQKQMQQQQQQKPVNAPAKSEPQENTDKPKFEP 151


>UniRef50_A0M2S9 Cluster: Sensor protein; n=1; Gramella forsetii
           KT0803|Rep: Sensor protein - Gramella forsetii (strain
           KT0803)
          Length = 737

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 5/46 (10%)
 Frame = +3

Query: 141 ITSAIKEDLV---DHRSLNGKEVVVV--ITEDFVILDLSIIDLNRD 263
           IT+++KED V   +   +NGK+ +V+  IT + +ILD+ +ID  R+
Sbjct: 78  ITNSLKEDGVFDIEETEINGKKFIVIPQITSENLILDIELIDDKRE 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 329,466,285
Number of Sequences: 1657284
Number of extensions: 4017616
Number of successful extensions: 9811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9806
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)