Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d06
         (644 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   1.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.7  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 126 CILRTRTFLF*YCYFYVN 73
           C+++  T +F +CY Y N
Sbjct: 261 CLIQFNTIVFSFCYCYYN 278



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 126 CILRTRTFLF*YCYFYVNIYSR 61
           C+++  T +F +CY Y +I  R
Sbjct: 542 CLIQFNTIVFAFCYCYYSISIR 563


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 227 YEILCYYHDDLLAVEAAVVHQILFDCRSYSWLAF 126
           YEI  + H+D   +      Q+ F  R   W+ F
Sbjct: 800 YEICDFLHEDNTTLVWDNEQQVPFAYRGNQWVGF 833


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 520 CSCKIGTSRKY*QTEI 567
           C C  G S  Y QTEI
Sbjct: 170 CHCSDGYSGSYCQTEI 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,112
Number of Sequences: 336
Number of extensions: 1082
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)