Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d06
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0060 - 40814639-40814661,40815449-40816181                       28   5.5  
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784           27   9.7  

>01_07_0060 - 40814639-40814661,40815449-40816181
          Length = 251

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -1

Query: 182 AAVVHQILFDCRSYSWLAFAFYVQGLSCFDIVIFTLIFIHVQLIHARRKAMASLALVVRK 3
           A+ +   + DCR    +A  +     +   I++ T     VQLIH+  KAM+ LA ++R+
Sbjct: 160 ASALEAEMVDCREGISMALQW-----TLLPIIVETDCLEMVQLIHSDEKAMSDLAFLIRE 214


>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
          Length = 394

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 192 KEVVVVITEDFVILDLSIIDLNRDKE 269
           ++ +V I + F+++D  ++D+N DKE
Sbjct: 253 EDALVKIRDFFILVDFVVLDINSDKE 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,646,672
Number of Sequences: 37544
Number of extensions: 104789
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)