Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d06
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    29   2.8  
U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 VDHRSLNGKEVVVVITEDFVILDLSIIDLNRD 263
           VDH S+  + +  +I+  F++  LS++D + D
Sbjct: 144 VDHLSIRAQYIAALISAPFIVSSLSLVDSDND 175


>U41106-2|AAA82410.1|  797|Caenorhabditis elegans Hypothetical
           protein W06A11.2 protein.
          Length = 797

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 296 LPSHY*AVDLLVPVEVYY-AQI*NYEILCYYHDDLLAVEAAVVHQILFDCRSYSWLAFAF 120
           L  HY    LLV ++ +   +  NYE+L  +HDDL   +   +     D R+Y   +F  
Sbjct: 622 LVEHYGHRILLVDLKDFQLTRFQNYEMLKIFHDDLFFSDIKKMPNRWEDNRAYQAFSFLA 681

Query: 119 YVQGLS 102
            +Q LS
Sbjct: 682 QLQFLS 687


>U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical
           protein C17H11.1 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 119 YVQGLSCFDIVIFTLIFIHVQLIHARRKA 33
           Y++ L+ FD++  T+I IH  L+   + A
Sbjct: 87  YIKSLAIFDLIALTMILIHYCLVSTTKMA 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,037
Number of Sequences: 27780
Number of extensions: 100131
Number of successful extensions: 255
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)