Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d05
         (496 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q06690 Cluster: Uncharacterized 9.4 kDa protein in IAP2...   124   1e-27
UniRef50_Q06669 Cluster: Uncharacterized 15.5 kDa protein in IAP...    95   1e-18
UniRef50_Q9YMP2 Cluster: LdOrf-85 peptide; n=16; Nucleopolyhedro...    48   9e-05
UniRef50_O10328 Cluster: Uncharacterized 14.9 kDa protein; n=5; ...    44   0.002
UniRef50_Q9PYS0 Cluster: ORF125; n=9; Granulovirus|Rep: ORF125 -...    37   0.28 

>UniRef50_Q06690 Cluster: Uncharacterized 9.4 kDa protein in
           IAP2-VLF1 intergenic region; n=12;
           Nucleopolyhedrovirus|Rep: Uncharacterized 9.4 kDa
           protein in IAP2-VLF1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 84

 Score =  124 bits (298), Expect = 1e-27
 Identities = 67/85 (78%), Positives = 67/85 (78%)
 Frame = +2

Query: 14  MNLYLLLGALTIFSLVYDKKENSXXXXXXXXXXXXXXXXSPAIISKNTESNVEDIPSHKA 193
           MNLYLLLGAL IFSLVYDKKENS                SPAIISKNTES VEDIPSHKA
Sbjct: 1   MNLYLLLGALAIFSLVYDKKENSIFLYLLILFLVFIIV-SPAIISKNTESTVEDIPSHKA 59

Query: 194 KSVRKKLEIEQALDAILNKNTSSID 268
           KSVRKKLEIEQALDAILNKNTSSID
Sbjct: 60  KSVRKKLEIEQALDAILNKNTSSID 84


>UniRef50_Q06669 Cluster: Uncharacterized 15.5 kDa protein in
           IAP2-VLF1 intergenic region; n=7;
           Nucleopolyhedrovirus|Rep: Uncharacterized 15.5 kDa
           protein in IAP2-VLF1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 133

 Score = 94.7 bits (225), Expect = 1e-18
 Identities = 45/69 (65%), Positives = 49/69 (71%)
 Frame = +2

Query: 290 MSNLMKNFFTEXXXXXXXXXXXXXXXXXXXDWLCEQVYPDKDFSLKLKRVINMFLNDEIE 469
           MSNLMKNFFTE                   +WLCEQVYPDKDFSLKLKRV+NMFLN+EIE
Sbjct: 1   MSNLMKNFFTELVKSTTFTTKVSVVKTTLSNWLCEQVYPDKDFSLKLKRVVNMFLNNEIE 60

Query: 470 NDXIYKLVE 496
           N+ IYKLVE
Sbjct: 61  NNKIYKLVE 69


>UniRef50_Q9YMP2 Cluster: LdOrf-85 peptide; n=16;
           Nucleopolyhedrovirus|Rep: LdOrf-85 peptide - Lymantria
           dispar multicapsid nuclear polyhedrosis virus (LdMNPV)
          Length = 86

 Score = 48.4 bits (110), Expect = 9e-05
 Identities = 22/40 (55%), Positives = 30/40 (75%)
 Frame = +2

Query: 149 KNTESNVEDIPSHKAKSVRKKLEIEQALDAILNKNTSSID 268
           K   S+  D+ + KAKS++KK ++E+A DAILNKNTSS D
Sbjct: 47  KPESSDAADLQTGKAKSIKKKRDLERAFDAILNKNTSSTD 86


>UniRef50_O10328 Cluster: Uncharacterized 14.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 14.9 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 130

 Score = 43.6 bits (98), Expect = 0.002
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +2

Query: 380 DWLCEQVYPDKDFSLKLKRVINMFLNDEIENDXIYKLV 493
           DWL  QVYPD+ FS K + V+ MF++ +++ + +Y LV
Sbjct: 31  DWLNSQVYPDERFSAKWRGVLKMFVDGQLDEESVYCLV 68


>UniRef50_Q9PYS0 Cluster: ORF125; n=9; Granulovirus|Rep: ORF125 -
           Xestia c-nigrum granulosis virus (XnGV) (Xestia
           c-nigrumgranulovirus)
          Length = 85

 Score = 36.7 bits (81), Expect = 0.28
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 152 NTESNVEDIPSHKAKSVRKKLEIEQALDAILNKNTSSID 268
           NT+S   D+ + + K  +KK       DAILNKN SS++
Sbjct: 47  NTDSAPHDLYNEETKKAKKKKHFNDMFDAILNKNNSSLE 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,464,377
Number of Sequences: 1657284
Number of extensions: 7109637
Number of successful extensions: 17690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17685
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)