Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30d04
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   0.89 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   1.6  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    27   2.1  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    26   2.7  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   2.7  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   2.7  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   3.6  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   3.6  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   6.3  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   6.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   6.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   6.3  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   8.3  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.3  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    25   8.3  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -2

Query: 229 IFKIGFLKHCSKRVVKRCVVGHIYNQFPPR*RTVLWRHFDFVAIQYLPSYRFPHI 65
           +++ G+++  SKRV K   V  + N      +   W H D   ++YLP +++ H+
Sbjct: 174 MYEEGWIEFESKRVAKS--VAELLNTNQIGGKKSSWYHDDIWNMKYLPKFKWHHL 226


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +2

Query: 71   WESIRWQILNGDEIEVSPEHRSLAWRELIINVANN------TPLDNTFRTMFQKADF 223
            ++S++WQ +  DE +      S  W+ L+     N      TP+ NT + ++    F
Sbjct: 966  FQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHF 1022


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 134 SLAWRELIINVANNTPLDNTFRTMFQKADFEN 229
           +L W+E + NV+NNT L      +    +F N
Sbjct: 225 ALEWKEKVYNVSNNTLLSEAHYKLALALEFTN 256


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 384 IQIKNKNT*AILTLVV*SLNRAGLLRAALILSLYI 280
           +++  K T  +LT ++ SL  AG+L   L+ SLY+
Sbjct: 155 LKLNGKETYTLLTKIL-SLGAAGMLEHVLLQSLYL 188


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 269 KTLTMYNERIRAALNRPARFNDQTTN-VNIAY 361
           KT+ M  E I  AL +   FN ++TN V+I+Y
Sbjct: 178 KTMDMCEESISGALQQLQLFNTESTNEVDISY 209


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 149 ELIIN-VANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKTLTMYNER 295
           +L+ N    N PL+++  +     D ++ + +TP+V+ + TK   +  +R
Sbjct: 520 QLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTKVSNVGQKR 569


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 74  ESIRWQILNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIV 253
           ESI   I   ++ +   E      R   I + N   LDN F +   +    N+    P++
Sbjct: 771 ESISMAIKYREQEQSGLEFLVKGKRSKNIFLTNLVKLDNPFNSFGDEQLDYNYRKRIPMI 830

Query: 254 YNLKTK 271
           Y+L+TK
Sbjct: 831 YDLRTK 836


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 185 DN-TFRTMFQKADFENF-DYNTPIVYNLKTKTLTMYNERIRAALN-RPARFNDQTTNV 349
           DN T  +   +A + N+ DY+   +  +K K L  YN+   +A++  P   +D++  V
Sbjct: 762 DNYTLLSKHDRAMYNNYADYSPDKIKEIKEKELNTYNDYFNSAISENPTLKSDRSEKV 819


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 475 SLFNFCCNIFTLRVGRTVCV 416
           S FN CCNI+  R+G ++C+
Sbjct: 864 SKFNSCCNIY--RLGYSMCM 881


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +2

Query: 119  SPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKTLTMYNERI 298
            +P  R+  W+EL + +  +     T R M     F   DY  PI   + T    ++ ++ 
Sbjct: 1629 NPLKRTNDWKELSVRLREDELRVQTARCMDCGTPFCQSDYGCPISNKIFTWNDLVFKQQW 1688

Query: 299  RAALNR 316
            + AL +
Sbjct: 1689 KEALTQ 1694


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
 Frame = +2

Query: 20  FSRKKSFGRHIAV-VVNMWESIRWQI----LNGD------EIEVSPEHRSLAWRELIINV 166
           F   + FG   ++ +V++ E I W I    +N +        EV P + +   R L   +
Sbjct: 168 FEESEIFGAFSSIPIVSIDEYITWMITENLINSEPSNSSFSYEVQPSNYTTFCRMLDEPL 227

Query: 167 ANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKTLTMYNERIRAALNRPARFNDQTTN 346
             N P+ +  R +    DF N   +TP   N +T+     ++ +++  ++P   ++  T 
Sbjct: 228 PANNPVQSNSRLVPLMKDFSNDIKHTP---NKETQPSNQVDDSLKSKDSKPLTMSEVLTQ 284

Query: 347 V 349
           +
Sbjct: 285 L 285


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 272 FLFLNCTQ-SVYCSRNFQNRLFETLF*TCCQAVCCWPHL 159
           FLFLN    + Y   +  +RLF T F  CC+ +  W  L
Sbjct: 345 FLFLNVIGIAAYKLEDPVHRLFVTAFSVCCECL-AWTSL 382


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 103 AIQYLPSYRFPHIDNNSNMATKRF 32
           +I YLPSY+ P   N SN+A   F
Sbjct: 443 SIDYLPSYKPP--SNGSNIAINAF 464


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 395 NVLVVFSDTNRTTDTKRKNVATKIK*TQR 481
           N+L   SDT R +D+  KNVA +    +R
Sbjct: 232 NILYSDSDTERQSDSGSKNVARQFSRIKR 260


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 116 VSPEHRSLAWRELIINVANNTPLDNTFR 199
           + P H  + WR++ +  A NT L++  R
Sbjct: 210 IQPYHSWVYWRDVDVETAPNTILEDLMR 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,043
Number of Sequences: 5004
Number of extensions: 43081
Number of successful extensions: 150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)