Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30d04
(494 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68) 29 2.1
SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3) 29 2.8
SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07) 28 4.9
SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23) 28 4.9
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36) 28 4.9
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_51663| Best HMM Match : Phage_min_tail (HMM E-Value=4.1) 28 4.9
SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6) 28 4.9
SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 28 4.9
SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061) 27 8.5
>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
Length = 794
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 341 TNVNIAYVFLFFICIVLLNVLVV---FSDTNRTTDTKRKNVATKI 466
TNV++ Y F F CI + N+ + D + T T KN T I
Sbjct: 422 TNVHVLYAFASFWCIAMCNMYITGYSMIDYHDTMSTHLKNKETPI 466
>SB_17183| Best HMM Match : DUF348 (HMM E-Value=5.3)
Length = 334
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 84 RIDSHILTTTAIWRPKDFFLE 22
RI +LT +WRPKD F+E
Sbjct: 6 RICERLLTNDDVWRPKDSFVE 26
>SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)
Length = 550
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 KTKTLTMYNERIRAALNRPARFNDQTTN 346
K K L + E + LNRP+ ND+ N
Sbjct: 455 KDKVLARWAEHFESVLNRPSAINDEAIN 482
>SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 KTKTLTMYNERIRAALNRPARFNDQTTN 346
K K L + E + LNRP+ ND+ N
Sbjct: 117 KDKVLARWAEHFESVLNRPSAINDEAIN 144
>SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
Length = 855
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 KTKTLTMYNERIRAALNRPARFNDQTTN 346
K K L + E + LNRP+ ND+ N
Sbjct: 216 KDKVLARWAEHFESVLNRPSAINDEAIN 243
>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
Length = 1092
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 KTKTLTMYNERIRAALNRPARFNDQTTN 346
K K L + E + LNRP+ ND+ N
Sbjct: 473 KDKVLARWAEHFESVLNRPSAINDEAIN 500
>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1395
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 KTKTLTMYNERIRAALNRPARFNDQTTN 346
K K L + E + LNRP+ ND+ N
Sbjct: 513 KDKVLARWAEHFESVLNRPSAINDEAIN 540
>SB_51663| Best HMM Match : Phage_min_tail (HMM E-Value=4.1)
Length = 143
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 242 TPIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVNIAYVFLFFICIVLLNVLVVF 412
T + Y L + LT+ + I LN+ R +TT++ I+ F F + + ++ F
Sbjct: 22 TFVQYLLPSIGLTVVSVGITRFLNKKTRMTPETTSIQISKAFQFKTSRMFIAIIAAF 78
>SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6)
Length = 358
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 KTKTLTMYNERIRAALNRPARFNDQTTN 346
K K L + E + LNRP+ ND+ N
Sbjct: 56 KDKVLARWAEHFESVLNRPSAINDEAIN 83
>SB_26934| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 1443
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 KTKTLTMYNERIRAALNRPARFNDQTTN 346
K K L + E + LNRP+ ND+ N
Sbjct: 948 KDKVLARWAEHFESVLNRPSAINDEAIN 975
>SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 KTKTLTMYNERIRAALNRPARFNDQTTN 346
K K L + E + LNRP+ ND+ N
Sbjct: 244 KDKVLARWAEHFESVLNRPSAINDEVIN 271
>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1766
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 263 KTKTLTMYNERIRAALNRPARFNDQTTN 346
K K L + E + LNRP+ ND+ N
Sbjct: 378 KDKVLARWAEHFESVLNRPSAINDEAIN 405
>SB_2029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -2
Query: 166 HIYNQFPPR*RTVLWRHFDFVAIQYLPSYRFPHIDNNSNMATKR 35
H +N++P T L + +D+ ++ + Y F + D + + KR
Sbjct: 189 HNFNKYPANLGTTLGKPYDYHSVMHYSRYAFSNDDEPTIVTKKR 232
>SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)
Length = 608
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 137 LAWRELIINVANNTPLDNTFRTMFQKADFENFD 235
+ W+ L ANN L + + +F K + EN++
Sbjct: 150 ILWKNLSTTSANNLVLSASTKPLFDKQEHENYE 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,805
Number of Sequences: 59808
Number of extensions: 334958
Number of successful extensions: 1003
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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