Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c22
         (157 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   1.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   1.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   1.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   1.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   1.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   1.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   1.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   1.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   1.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   1.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    19   7.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    19   7.4  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    19   7.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    19   7.4  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 68  SYKSDYTN*NYNSRRH 21
           +YK +Y N NYN+  +
Sbjct: 93  NYKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 68  SYKSDYTN*NYNSRRH 21
           +YK +Y N NYN+  +
Sbjct: 93  NYKYNYNNNNYNNNNY 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 68  SYKSDYTN*NYNSRRH 21
           +YK +Y N NYN+  +
Sbjct: 328 NYKYNYNNNNYNNNNY 343


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 68  SYKSDYTN*NYNSR 27
           +YK +Y N NYN +
Sbjct: 94  NYKYNYNNNNYNKK 107


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 68  SYKSDYTN*NYNSR 27
           +YK +Y N NYN +
Sbjct: 94  NYKYNYNNNNYNKK 107


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 68  SYKSDYTN*NYNSR 27
           +YK +Y N NYN +
Sbjct: 94  NYKYNYNNNNYNKK 107


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 68  SYKSDYTN*NYNSR 27
           +YK +Y N NYN +
Sbjct: 94  NYKYNYNNNNYNKK 107


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 68  SYKSDYTN*NYNS 30
           +YK +Y N NYN+
Sbjct: 95  NYKYNYNNNNYNN 107


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 68  SYKSDYTN*NYNS 30
           +YK +Y N NYN+
Sbjct: 95  NYKYNYNNNNYNN 107


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 68  SYKSDYTN*NYNS 30
           +YK +Y N NYN+
Sbjct: 95  NYKYNYNNNNYNN 107


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 68  SYKSDYTN*NYNS 30
           +YK +Y N NYN+
Sbjct: 95  NYKYNYNNNNYNN 107


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 62  KSDYTN*NYNSRRHVARRVV 3
           K +Y N NYN + +    ++
Sbjct: 103 KYNYNNNNYNKKLYYKNYII 122


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 50  CSRFYSFIFTIVCNIL 97
           C RFY  I T+  N L
Sbjct: 126 CGRFYGNIQTVXNNWL 141


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 23  VGGNYNFN*CSRFYSFIFTIVCNI 94
           +  NYN+N  +  Y  ++  + NI
Sbjct: 318 LSNNYNYNNYNNNYKPLYYNIINI 341


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +3

Query: 111 REQQQYSDSIDTEKK 155
           REQ+++SD + ++++
Sbjct: 77  REQREHSDRVTSQQQ 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,691
Number of Sequences: 438
Number of extensions: 393
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)