Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30c21
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0514 - 3718795-3718860,3719349-3719524,3719785-3719877,371... 67 7e-12
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 29 1.7
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 28 5.2
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 28 5.2
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 28 5.2
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 28 5.2
>02_01_0514 -
3718795-3718860,3719349-3719524,3719785-3719877,
3719961-3720111
Length = 161
Score = 67.3 bits (157), Expect = 7e-12
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Frame = +2
Query: 122 HYIPCKIEQDGSANVKKYFDPYIVENKSQEL---SATFRGHPLDGTQMTFPEGYRAVLVT 292
H +PC I+Q+G+A V YF P + + + A FRG L G ++ P+GYR ++
Sbjct: 27 HLLPCGIKQNGAAAVSDYFKPKDTGVEVEGIRVEEAFFRGRKLQGATISLPDGYRGYVLE 86
Query: 293 ETK----RPLTEDAERKFQVTGGFKNFTYWNWDKKPSKNDDLCKAMDWIEIAEAIH 448
+ E F+ F+N TYWN D PS D L + + +A A+H
Sbjct: 87 KRSGGKDMKKLEGEVSNFKSRAEFQNITYWNHDTTPSAEDPLPRCFHLLTVANAMH 142
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 293 ETKRPLTEDAERKFQVTGGFKNFTYWNWDKKPSKNDDLCK 412
E + PL A+R+F G K+F +WD K S D +
Sbjct: 477 EVETPLDVPAKRRFAKYRGLKSFRTSSWDPKESLPQDYAR 516
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 86 KNENEDIFEQKSHYIPCKIEQDGSANVKKYFDPYIVEN--KSQELSATFRGHPLDGTQMT 259
KNE+ D +E +H K + + + +PYI ++ K+ E + T +
Sbjct: 427 KNESSDDYEMNNHRKTKKERSNMRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDY 486
Query: 260 FPEGYRAVLVTETKR--PLTEDAERKFQV 340
F E Y + E+ + P R+F++
Sbjct: 487 FDEEYNKKVTQESTKTNPSKRRVTRRFKI 515
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 86 KNENEDIFEQKSHYIPCKIEQDGSANVKKYFDPYIVEN--KSQELSATFRGHPLDGTQMT 259
KNE+ D +E +H K + + + +PYI ++ K+ E + T +
Sbjct: 427 KNESSDDYEMNNHRKTKKERSNMRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDY 486
Query: 260 FPEGYRAVLVTETKR--PLTEDAERKFQV 340
F E Y + E+ + P R+F++
Sbjct: 487 FDEEYNKKVTQESTKTNPSKRRVTRRFKI 515
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 86 KNENEDIFEQKSHYIPCKIEQDGSANVKKYFDPYIVEN--KSQELSATFRGHPLDGTQMT 259
KNE+ D +E +H K + + + +PYI ++ K+ E + T +
Sbjct: 427 KNESSDDYEMNNHRKTKKERSNMRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDY 486
Query: 260 FPEGYRAVLVTETKR--PLTEDAERKFQV 340
F E Y + E+ + P R+F++
Sbjct: 487 FDEEYNKKVTQESTKTNPSKRRVTRRFKI 515
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +2
Query: 86 KNENEDIFEQKSHYIPCKIEQDGSANVKKYFDPYIVEN--KSQELSATFRGHPLDGTQMT 259
KNE+ D +E +H K + + + +PYI ++ K+ E + T +
Sbjct: 606 KNESSDDYEMNNHRKTKKERSNMRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDY 665
Query: 260 FPEGYRAVLVTETKR--PLTEDAERKFQV 340
F E Y + E+ + P R+F++
Sbjct: 666 FDEEYNKKVTQESTKTNPSKRRVTRRFKI 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,522,450
Number of Sequences: 37544
Number of extensions: 207379
Number of successful extensions: 488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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