Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c21
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z78413-1|CAB01663.1|  727|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
            T01D3.7 protein.
          Length = 2882

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = +2

Query: 173  YFDPYIVENKSQELSATFRGHPLDGTQMTFPEGYRAVLVTETKRPLTEDAERKFQVTGGF 352
            +F+P +V  K Q++  T RG+ LDGT   +      + VT +KR ++      F +T  +
Sbjct: 1574 HFEPSVVTKKGQKILVTPRGN-LDGTIGLWNSEIAGITVTPSKRSVS--LNESFWITFSW 1630

Query: 353  KN 358
            K+
Sbjct: 1631 KD 1632


>Z78413-1|CAB01663.1|  727|Caenorhabditis elegans Hypothetical
           protein T01C3.1 protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/80 (18%), Positives = 34/80 (42%)
 Frame = +2

Query: 131 PCKIEQDGSANVKKYFDPYIVENKSQELSATFRGHPLDGTQMTFPEGYRAVLVTETKRPL 310
           P +     + ++  Y  P  + NK ++ +  +  HP +G      + +   L+ E+ +  
Sbjct: 561 PLQPTNSNNQDLVGYRTPRQIRNKKKKNNPFYNEHPTEGLPNFVYDTFVKKLIGESSKSD 620

Query: 311 TEDAERKFQVTGGFKNFTYW 370
            ED+ +    TG  +   +W
Sbjct: 621 IEDSGKSLSKTGQKRIEDWW 640


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,351,013
Number of Sequences: 27780
Number of extensions: 196078
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)