Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c21
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   5.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   DINQNNNKRLKFHNLID*NVHI 66
           D+  +N K   FHN+I  NV+I
Sbjct: 119 DLFFSNEKEGHFHNIIMPNVYI 140


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 1   DINQNNNKRLKFHNLID*NVHI 66
           D+  +N K   FHN+I  NV+I
Sbjct: 119 DLFFSNEKEGHFHNIIMPNVYI 140


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 429 SIQSMALHKSSFFDGFLS-QFQYVK 358
           S+ S+ L  S FFD F++ Q Q +K
Sbjct: 298 SVTSVRLISSGFFDNFVTVQIQPLK 322


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 2   TLTKTITKD*NFTI*LIKMSILVENNLIKNENED 103
           T T T     +  + ++   IL E+N+  NE+ D
Sbjct: 392 TTTSTTISQKHIKVFVVNKDILHEHNVDDNEDHD 425


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 411 LHKSSFFDGFLSQFQYVKFLKPPV 340
           + K  +FDGF  +    + L+PP+
Sbjct: 620 IQKHKWFDGFNWEGLRARTLEPPI 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,803
Number of Sequences: 438
Number of extensions: 2364
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)