Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c20
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0394 - 17261008-17262476,17262554-17262743                       29   2.6  
08_01_0083 - 604175-605776                                             28   3.4  
08_01_0082 - 588269-588434,590800-591653                               28   3.4  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     28   3.4  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    28   4.5  
12_01_0827 - 7662180-7662192,7662451-7662764                           27   5.9  
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591...    27   5.9  
01_07_0315 - 42692539-42693260,42693357-42693609                       27   7.8  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    27   7.8  

>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 311 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 225
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>08_01_0083 - 604175-605776
          Length = 533

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 208
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 208
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 214 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 306
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 114 LKNGAGVSNHMWHRLKNDDGDDKPCLN 34
           L  G G +NH  H   +DD DD P L+
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWLH 82


>12_01_0827 - 7662180-7662192,7662451-7662764
          Length = 108

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 212 PKLQNTLLLTARH--STHPTVAKERSDFVACPR 304
           PK Q T++ +AR   +T   + ++RSD  ACPR
Sbjct: 25  PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57


>04_04_0532 +
           26058100-26058229,26058355-26058559,26058678-26059157,
           26059262-26059354,26059526-26059636,26059720-26059792,
           26060072-26060208,26061040-26061097
          Length = 428

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 115 PVSHADAEARVTDAARVDLAHTEDPGAVH*QAAE 216
           P +   A  R T  A+VD A  EDPG +   A E
Sbjct: 87  PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120


>01_07_0315 - 42692539-42693260,42693357-42693609
          Length = 324

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -3

Query: 195 GSWIFCMCEVYPGGVC-NPSF 136
           G   FCMC+ YPG  C +P F
Sbjct: 79  GCKTFCMCDFYPGVSCGDPRF 99


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +2

Query: 47  LSSPSSFFNRCHIWFDTPAPFFSRYHTQT 133
           LSSPS   +R    FDT  PF  R HTQ+
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQS 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,385,165
Number of Sequences: 37544
Number of extensions: 204647
Number of successful extensions: 557
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)