Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c19
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    52   7e-08
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    28   0.72 
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   1.7  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   2.2  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   3.8  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   5.1  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    25   5.1  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.7  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   6.7  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   8.9  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   8.9  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 51.6 bits (118), Expect = 7e-08
 Identities = 30/73 (41%), Positives = 43/73 (58%)
 Frame = +3

Query: 261 IMNLKWELRNGEILAEERGAVVVSNHQYTLDVLGMFNIWDVADRISXIAKKELFYVWPFG 440
           I++ ++++ N EIL + + AV+V NHQ  LD+L +   +      S IAKK L YV   G
Sbjct: 82  ILDFRFKIENEEILRKHKSAVLVVNHQSELDILAIGRTF--GPNYSVIAKKSLRYVPILG 139

Query: 441 LSAYLAGVVFIDR 479
               L+ VVFIDR
Sbjct: 140 WFMILSDVVFIDR 152


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 473 YKDYSGQIGRKTKWPNVKQFFFGYR*NSISHIPY 372
           Y  + G + +  K   +K FF+GYR   +  IP+
Sbjct: 155 YPSFRGAVKQIAKQEGMKTFFYGYRATILRDIPF 188


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 309 ERGAVVVSNHQYTLDVLGMFNIWDVADRISXIAKKELFYVWPFGLSAYLAGV--VFIDRY 482
           ER + V  N  Y + V  +  I  V D +   A     ++  FGL+  +AGV   F+ RY
Sbjct: 67  ERESSVPGNAVYDITVRDIDAIVPVTDDVDIPASTFRMWILAFGLATVIAGVDAFFLMRY 126


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 310 SSARISPFRSSHFKFIIFVTCFSIFAAHLVFL 215
           SS R   FRS    F+ F+ C ++FA  +  L
Sbjct: 232 SSLRSILFRSEGLSFVQFLVCIAVFATFMYTL 263


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 96  ITDR--EPNKIKYHFYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKH 251
           ITDR  +   +    +F+   V+  ++++  + LFL S   +   KWA KI+ +
Sbjct: 3   ITDRILQNRIVSKVIFFVLRSVTLSLVSVTRFSLFLLSFATITVPKWAYKIVTY 56


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +3

Query: 132 FYFISFYVSCCMLALVMWPLFLFS---PKNVRNT--KWAAKILKHVTKIMNLK 275
           F F+S Y+  CML        ++S   P N++N+  K AA + +  TK +  K
Sbjct: 689 FQFLSIYIPECMLPFTKLLKSIYSPDCPTNIQNSAIKNAASVHEQCTKAIYQK 741


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 197 VQPKKCKEYQVGSENTKTRNKDNEL 271
           VQPK+C +  +G E+ K  ++ ++L
Sbjct: 8   VQPKRCFQTAIGKESPKGNSEKDQL 32


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 147 FYVSCCMLALVMWPLFLFSPKNVRNT--KWAAKILKHVTKIMNLKW 278
           F+++  M A+V+  +F F P+   +T   + A+ L++ T+  N+KW
Sbjct: 258 FWINMIMGAVVIVIIFFFMPETHGDTILDYKARYLRNKTR--NMKW 301


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 419 VLRLAIWSFCLFGRSSLY 472
           +L L+I +FC+FG S +Y
Sbjct: 37  ILSLSINAFCVFGASGIY 54


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 218 EYQVGSENTKTRNKDNELEMGAAKR*DPGRGTRCSCRFKSSVHIGCFRN 364
           EY VG+ +T T+N   +L++  A         R  C  KS      FR+
Sbjct: 211 EYNVGNTSTNTKNASRQLQI--ANEHSRKARKRSFCFLKSFAMFSSFRS 257


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 124 LILFGSLSVIFLNKY 80
           +I+FGSLS+IF++ Y
Sbjct: 401 IIVFGSLSIIFIHIY 415


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 99  TDREPNKIKYHFYFISFYVSCCMLALVMWPLFLFSPKNV 215
           T  EP      FY    Y SC +L + +W     SP+++
Sbjct: 425 TSSEPTSYDSEFY----YFSCTLLVIGLWKRLRASPQDL 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,479
Number of Sequences: 5004
Number of extensions: 48711
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)