Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c19
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019...    36   0.026
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070...    29   2.2  
08_02_0243 - 14708055-14708416,14708487-14709324,14709482-147103...    28   3.9  
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212...    28   5.1  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    27   6.8  
03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162...    27   6.8  
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020...    27   8.9  
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    27   8.9  
07_03_0870 - 22177711-22177818,22177954-22178176,22178310-221784...    27   8.9  

>10_08_0507 +
           18401266-18401341,18401448-18401633,18401918-18401953,
           18402244-18402650,18402998-18403099,18403206-18403433
          Length = 344

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
 Frame = +3

Query: 174 LVMWPL-FLFSPKNVRNTKWAAKILKHVTKIMNLKWELRNGEILAEERG-AVVVSNHQYT 347
           +V+ PL  LF     R   + AKI   +T  M  K ++   E L      AV V+NHQ  
Sbjct: 128 VVVHPLVLLFDRYRRRAQHYIAKIWATLTISMFYKLDVEGMENLPPNSSPAVYVANHQSF 187

Query: 348 LDVLGMFNIWDVADRISXIAKKELFYVWPFGLSAYLAGVVFIDRYDPK 491
           LD+   + +  +      I+K  +F     G + YL GV+ + R D +
Sbjct: 188 LDI---YTLLTLGRCFKFISKTSIFMFPIIGWAMYLLGVIPLRRMDSR 232


>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
            32407174-32407257,32407362-32407784,32408368-32408434,
            32409238-32409430,32409577-32409680,32409787-32409990,
            32410174-32410427,32410511-32410735,32410812-32411033,
            32411109-32411162,32411337-32411402,32411496-32411633,
            32411979-32412032,32412334-32412393,32412975-32413340,
            32413415-32413582
          Length = 1478

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +2

Query: 317  CSCRFKSSVHIGCFRNVQ 370
            CS R K++VHIGC+RN++
Sbjct: 1099 CS-RCKAAVHIGCYRNIE 1115


>08_02_0243 -
           14708055-14708416,14708487-14709324,14709482-14710323,
           14710466-14710520,14711535-14711549,14713030-14713033,
           14713340-14713424,14714045-14714084
          Length = 746

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 431 PNVKQFFFGYR*NSISHIPYIEHS*NIQCVLMI*NDNC 318
           PNV++   G   N++  IP I+   N++C+L+  +D C
Sbjct: 502 PNVRRLAVG---NAVEEIPGIQDQKNLRCLLVYHHDAC 536


>04_04_1217 +
           31820734-31820841,31820929-31821078,31821183-31821281,
           31821398-31821490,31821585-31821851
          Length = 238

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
 Frame = +3

Query: 249 HVTKIMNLKWELRN-----GEILAEERGAVVVSNHQYTLDVLGMFNIWDVADRISXIAKK 413
           HVT  M L W L N     G      RG + + NH   LD+  +  +W        IAKK
Sbjct: 30  HVTGRM-LMWILGNPIKLEGMENLNTRG-IFICNHASPLDIFLV--MWLAPTGTVGIAKK 85

Query: 414 ELFYVWPFGLSAYLAGVVFIDRYDPKEAYKQLQ 512
           E+ +   FG    LA  + I R +P  A + ++
Sbjct: 86  EIIWYPLFGQLYVLANHLRIHRSNPAAAIESMK 118


>04_01_0508 +
           6647812-6647820,6647864-6648226,6649351-6650673,
           6653569-6653766,6654485-6654568,6655175-6655920,
           6656480-6657341
          Length = 1194

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 210 NVRNTKWAAKILKHVTKIMNLKWELRNGEILAEERGAVVVSNHQYTLDVLGMFNIWDVAD 389
           N+RN   A   L  V  ++ ++    N ++ +     VVV+ H+ T+  +       V D
Sbjct: 275 NIRNKGQATLFLDQVPNLLKVENVQNNNQLQSSLAENVVVAIHEDTMAEMVRLEAIKVVD 334

Query: 390 RIS 398
           RIS
Sbjct: 335 RIS 337


>03_01_0205 +
           1621760-1621784,1622079-1622208,1622569-1622635,
           1622806-1622909,1623099-1623147,1623190-1623290,
           1623623-1623740,1624342-1624455
          Length = 235

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 308 GTRCSCRFKSSVHIGCFRNVQYM 376
           GT+C C F SS + G   +V YM
Sbjct: 148 GTKCECHFWSSNYCGSTDSVDYM 170


>11_06_0228 +
           21497248-21498143,21499831-21501700,21501934-21502038,
           21502139-21502232,21502335-21502363
          Length = 997

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 120 IKYHFYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKH 251
           + + +Y +  Y+  CML L ++P      K++   KW A+   H
Sbjct: 439 LSFSYYHLPSYLKTCMLYLSIYPEDHLIYKDILIWKWIAEGFVH 482


>07_03_1523 +
           27432991-27433199,27433585-27434185,27434468-27434642,
           27434686-27436418,27436871-27437317
          Length = 1054

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 129 HFYFISFYVSCCMLALVMWPLFLFSP 206
           H ++   +++ CMLA ++ PLF+  P
Sbjct: 405 HVFWRRIFLNSCMLAAIVMPLFVDDP 430


>07_03_0870 -
           22177711-22177818,22177954-22178176,22178310-22178470,
           22178558-22178733,22178865-22178970,22179078-22179221,
           22179300-22179455,22179855-22179959,22180067-22180126,
           22180160-22180197,22180481-22180538
          Length = 444

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 300 LAEERGAVVVSNHQYTLDVLGMFNIWDVADRISXIAK 410
           L+E+ GA  +    Y L ++ M+N+WD+  R   + K
Sbjct: 323 LSEDTGAHSLGTW-YALTLIAMYNVWDLIGRYLPLIK 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,219,027
Number of Sequences: 37544
Number of extensions: 287538
Number of successful extensions: 669
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)