Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30c19
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1995| Best HMM Match : Acyltransferase (HMM E-Value=0.00021) 58 3e-09
SB_53078| Best HMM Match : Acyltransferase (HMM E-Value=2.8026e-45) 58 3e-09
SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.015
SB_10344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 29 2.3
SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_31895| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_1995| Best HMM Match : Acyltransferase (HMM E-Value=0.00021)
Length = 127
Score = 58.4 bits (135), Expect = 3e-09
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = +3
Query: 195 LFSPKNVRNTKWAAKILKHVT-KIMNLKWELRNGEILAEERGAVVVSNHQYTLDVLGMFN 371
L P NV N +++L ++ K ++ E + E L E + ++VSNHQ +LD+ +
Sbjct: 13 LLRPGNVNNFYRTSRLLYWISSKYFRVRVEAKGLENLPENKNCIIVSNHQSSLDMFPILR 72
Query: 372 IWDVADRISXIAKKELFYVWPFGLSAYLAGVVFIDRYDPKEA 497
I + IAK+EL + FG++A+L G VFI R D + A
Sbjct: 73 I--CPPYTTFIAKRELLFAPFFGVAAWLTGTVFIKRGDSRSA 112
>SB_53078| Best HMM Match : Acyltransferase (HMM E-Value=2.8026e-45)
Length = 218
Score = 58.4 bits (135), Expect = 3e-09
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = +3
Query: 195 LFSPKNVRNTKWAAKILKHVT-KIMNLKWELRNGEILAEERGAVVVSNHQYTLDVLGMFN 371
L P NV N +++L ++ K ++ E + E L E + ++VSNHQ +LD+ +
Sbjct: 13 LLRPGNVNNFYRTSRLLYWISSKYFRVRVEAKGLENLPENKNCIIVSNHQSSLDMFPILR 72
Query: 372 IWDVADRISXIAKKELFYVWPFGLSAYLAGVVFIDRYDPKEA 497
I + IAK+EL + FG++A+L G VFI R D + A
Sbjct: 73 I--CPPYTTFIAKRELLFAPFFGVAAWLTGTVFIKRGDSRSA 112
>SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 48 LFMSSILFTFAYLFKKITDREPNKIKYHFYFISFYVSCCMLALVMWPLFLFSPKN-VRNT 224
L++ ++ +LFKK D P+++ + + + F+V+ C+L +M+ +FL ++ +R+
Sbjct: 260 LYIFLSIYHVEFLFKKTLDYNPSEVAVYLFLLIFHVN-CVLGPIMYFVFLDDFRHALRSL 318
Query: 225 KWAAKILKHVTKIMNLKWELRNGEI 299
W K T+ N + GE+
Sbjct: 319 LWNKKRRSERTRSCNTTSQTIMGEM 343
>SB_10344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNV 215
FY I+FYV C ++ ++ W +F ++
Sbjct: 89 FYLINFYVPCVVMVIMSWIVFWMDSSSI 116
>SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 480
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 78 AYLFKKITDREPNKIKYHFYFISFYVSCCMLALVMWPLF 194
A ++K + K + FYFI FY+ C ++ + W F
Sbjct: 257 AGVYKNLVVTFTFKRRMGFYFIQFYIPCIVMVTLSWISF 295
>SB_13324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 179 DVAAFPVQPKKCKEYQVGSENTKTR 253
D+A P++CK YQ SEN K R
Sbjct: 68 DIAVLTNNPERCKLYQSESENIKGR 92
>SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 191 FPVQPKKCKEYQVGSENTKTRNKDNELE 274
FPV + ++YQ+ NTKT + D E+E
Sbjct: 121 FPVIKDETRKYQLARFNTKTMDLDEEVE 148
>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = +3
Query: 189 LFLFSPKNVRNTKWAAKILKHVTKIMNLKWELRNGEILAEERGAVVVSNHQYTLDVLGMF 368
L ++ P RN+ + H M + +LA E+G +VV+ + Y L +LG
Sbjct: 104 LNVYKPSATRNSSLPVLVFIHGGAFMRFSAHEDDPSLLATEQGIMVVTIN-YRLGILGFL 162
Query: 369 NIWDVADRISXI 404
D+ + + +
Sbjct: 163 CSGDIKENLGLL 174
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 357 KHPMCTDDLKRQLHRVPR 304
+HP C DD++R H VP+
Sbjct: 863 EHPDCADDVQRLCHEVPK 880
>SB_31895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 297 ILAEE--RGAVVVSNHQYTLDVLGMFNIWDVADRISXIAKKELFYVWPF 437
+LAEE R +V YT+ VLG+ N+ V + + + Y++ F
Sbjct: 108 LLAEEKDRQLLVSLVEDYTVPVLGLANVEPVLPKTKKVTLSYVIYIYSF 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,282
Number of Sequences: 59808
Number of extensions: 352800
Number of successful extensions: 822
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -