Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30c19
(516 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 33 0.001
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 33 0.001
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 26 0.20
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.3
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 4.3
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 4.3
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 4.3
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 4.3
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 22 4.3
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 4.3
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 4.3
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 4.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 7.5
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 33.5 bits (73), Expect = 0.001
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 117 KIKYHFYFISFYVSCCMLALVMWPLF 194
K ++ +Y I Y+ CCML +V W F
Sbjct: 238 KREFSYYLIQIYIPCCMLVIVSWVSF 263
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 33.5 bits (73), Expect = 0.001
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 117 KIKYHFYFISFYVSCCMLALVMWPLF 194
K ++ +Y I Y+ CCML +V W F
Sbjct: 238 KREFSYYLIQIYIPCCMLVIVSWVSF 263
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 26.2 bits (55), Expect = 0.20
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 141 ISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKI 242
ISFYV C ++ + L+ ++ K+V++ + K+
Sbjct: 199 ISFYVPCIVMLGIYCRLYCYAQKHVKSIRAVTKL 232
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 2.5
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNL 272
+YF + V C ++A + F P + IL +T +N+
Sbjct: 233 YYFFNLIVPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVFLNM 279
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNL 272
+YF + V C +++ + F P + IL +T +NL
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNL 272
+YF + V C +++ + F P + IL +T +NL
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNL 272
+YF + V C +++ + F P + IL +T +NL
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNL 272
+YF + V C +++ + F P + IL +T +NL
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNL 272
+YF + V C +++ + F P + IL +T +NL
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNL 272
+YF + V C +++ + F P + IL +T +NL
Sbjct: 196 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 242
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNL 272
+YF + V C +++ + F P + IL +T +NL
Sbjct: 264 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 310
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 3.3
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 132 FYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNL 272
+YF + V C +++ + F P + IL +T +NL
Sbjct: 264 YYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNL 310
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.8 bits (44), Expect = 4.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +3
Query: 192 FLFSPKNVRNTKWAAKILKHVTKIMNLKWE 281
FL P + + K + L H T M +W+
Sbjct: 167 FLIYPHDTQECKLQMESLSHTTDEMIFQWD 196
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = +2
Query: 200 QPKKCKEYQVGSENTKTRNK 259
+ K CK+Y + S + ++R++
Sbjct: 203 ETKTCKKYAISSNSLRSRSR 222
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = +2
Query: 200 QPKKCKEYQVGSENTKTRNK 259
+ K CK+Y + S + ++R++
Sbjct: 203 ETKTCKKYAISSNSLRSRSR 222
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = +2
Query: 200 QPKKCKEYQVGSENTKTRNK 259
+ K CK+Y + S + ++R++
Sbjct: 203 ETKTCKKYAISSNSLRSRSR 222
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = +2
Query: 200 QPKKCKEYQVGSENTKTRNK 259
+ K CK+Y + S + ++R++
Sbjct: 203 ETKTCKKYAISSNSLRSRSR 222
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = +2
Query: 200 QPKKCKEYQVGSENTKTRNK 259
+ K CK+Y + S + ++R++
Sbjct: 203 ETKTCKKYAISSNSLRSRSR 222
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.8 bits (44), Expect = 4.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = +2
Query: 200 QPKKCKEYQVGSENTKTRNK 259
+ K CK+Y + S + ++R++
Sbjct: 203 ETKTCKKYAISSNSLRSRSR 222
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.8 bits (44), Expect = 4.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = +2
Query: 200 QPKKCKEYQVGSENTKTRNK 259
+ K CK+Y + S + ++R++
Sbjct: 203 ETKTCKKYAISSNSLRSRSR 222
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 7.5
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 336 HQYTLDVLGMFNIWDVADRISXIAKKEL 419
H YT+ F WD A S + K L
Sbjct: 1397 HGYTIHYKPEFGDWDTAQISSTVQKYTL 1424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,906
Number of Sequences: 438
Number of extensions: 3827
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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