Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c19
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30580.1 68417.m04339 phospholipid/glycerol acyltransferase f...    35   0.028
At5g55980.1 68418.m06984 serine-rich protein-related contains so...    29   2.5  
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated...    27   5.7  
At4g12890.1 68417.m02017 gamma interferon responsive lysosomal t...    27   5.7  
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (...    27   7.5  
At4g12750.1 68417.m02002 expressed protein                             27   7.5  
At4g11540.1 68417.m01851 DC1 domain-containing protein contains ...    27   9.9  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    27   9.9  

>At4g30580.1 68417.m04339 phospholipid/glycerol acyltransferase
           family protein
          Length = 356

 Score = 35.1 bits (77), Expect = 0.028
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
 Frame = +3

Query: 189 LFLFSPKNVRNTKWAAKILKHVTKIMNLKWELRNGEIL-AEERGAVVVSNHQYTLDVLGM 365
           + LF P   +   + AK+   ++     K  +   E L + +  AV VSNHQ  LD+   
Sbjct: 152 VLLFDPYRRKFHHFIAKLWASISIYPFYKINIEGLENLPSSDTPAVYVSNHQSFLDI--- 208

Query: 366 FNIWDVADRISXIAKKELFYVWPFGLSAYLAGVVFIDRYDPK 491
           + +  +      I+K  +F +   G +  + GVV + R DP+
Sbjct: 209 YTLLSLGKSFKFISKTGIFVIPIIGWAMSMMGVVPLKRMDPR 250


>At5g55980.1 68418.m06984 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 113

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 230 GSENTKTRNKDNELEMGAAKR*DPGRGTRCSCRFKSSVHIGCFR 361
           GS   +++++DN        R   G+ TR +C    + H G FR
Sbjct: 33  GSSTVESKSQDNNSPSLKRWRSSSGKSTRLNCLCSPTTHAGSFR 76


>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
           protein, Candida albicans, PIR2:S58135
          Length = 343

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 354 HPMCTDDLKRQLHRVPRPGSH 292
           H  C  ++K  +H +PRP SH
Sbjct: 323 HNECNHNMKFSVHPIPRPSSH 343


>At4g12890.1 68417.m02017 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 232

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 24  ELVEMWHALFMSSILFTFAYLFKKITDREPNKIKYHFYFISFYVSC 161
           + V+++  LF++  LF F Y    +     NK+K + Y+ S    C
Sbjct: 8   KFVDLFPCLFLAC-LFVFTYSNNLVVAENSNKVKINLYYESLCPYC 52


>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (IRX3)
            identical to gi:5230423
          Length = 1026

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 509  KLFISFLGIVSVYKDYSGQIGRKTKWPNV 423
            KLF SF  IV +Y    G +GR+ + P +
Sbjct: 960  KLFFSFWVIVHLYPFLKGLMGRQNRTPTI 988


>At4g12750.1 68417.m02002 expressed protein 
          Length = 1108

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 260 DNELEMGAAKR*DPGRGTRCSCRFKSSVHIGCF 358
           D ELEM   +R + G    CSC   SS   GCF
Sbjct: 266 DEELEM--RERHERGNPLTCSCHHPSSGSHGCF 296


>At4g11540.1 68417.m01851 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 525

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 13  NHKTNWSKCGTRCS-CPQYYSHSRIYLKK 96
           + K +W+  G  C  CPQY  HS+   +K
Sbjct: 228 HQKVDWTWGGYSCQRCPQYVVHSKCATRK 256


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 23/83 (27%), Positives = 33/83 (39%)
 Frame = +3

Query: 126 YHFYFISFYVSCCMLALVMWPLFLFSPKNVRNTKWAAKILKHVTKIMNLKWELRNGEILA 305
           YH  FI+   +  +L     PL L S   V        IL  + +    K ELR G++  
Sbjct: 70  YHIQFITLEPNALLL-----PLLLHSDM-VFFVHTGTGILNWIDEESERKLELRRGDVFR 123

Query: 306 EERGAVVVSNHQYTLDVLGMFNI 374
              G V   +    L V  +FN+
Sbjct: 124 LRSGTVFYVHSNEKLRVYAIFNV 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,050
Number of Sequences: 28952
Number of extensions: 245376
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)