Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30c17
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 46 3e-05
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 46 3e-05
11_06_0507 + 24402239-24402297,24402686-24402753,24403704-244037... 30 1.3
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 30 1.7
07_01_1024 - 8844393-8844482,8844579-8844850,8844924-8844983,884... 29 3.0
07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934 28 6.9
05_01_0372 - 2913518-2916562,2916674-2917528 28 6.9
07_03_0970 - 23034521-23034928,23036173-23037081 27 9.1
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584... 27 9.1
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147... 27 9.1
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Frame = +2
Query: 458 ELEEEISRDKKALLEEFER-------RRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 616
E + E+S D +A E ER RR+A + V T+D VR LR+LGEPV LFGE
Sbjct: 60 EADYEVSDDHRAARERHERAVQELLQRRRAFAMAVPTNDSAVRARLRRLGEPVTLFGERE 119
Query: 617 AE 622
E
Sbjct: 120 ME 121
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Frame = +2
Query: 458 ELEEEISRDKKALLEEFER-------RRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGP 616
E + E+S D +A E ER RR+A + V T+D VR LR+LGEPV LFGE
Sbjct: 60 EADYEVSDDHRAARERHERAVQELLQRRRAFAMAVPTNDSAVRARLRRLGEPVTLFGERE 119
Query: 617 AE 622
E
Sbjct: 120 ME 121
>11_06_0507 +
24402239-24402297,24402686-24402753,24403704-24403785,
24403894-24403945,24405368-24405413,24405568-24405626,
24405736-24405803,24406009-24406119,24406236-24406312,
24406478-24406554
Length = 232
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = +2
Query: 458 ELEEEISRDKKALLEEFERRRKARQLNVSTDD 553
E E+EISR+K+ L+E ++R++ R+ + T+D
Sbjct: 161 EKEKEISREKEMELKERDKRKREREGSEETED 192
>03_05_0175 +
21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 464 EEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPV 595
EEE+ +++ EE E + + + +++EVR +++ GE V
Sbjct: 60 EEEVEEEEEIEEEEVEEEIEEEEEEIEEEEEEVREEVQEAGEEV 103
>07_01_1024 -
8844393-8844482,8844579-8844850,8844924-8844983,
8845689-8845785,8845859-8845898,8846085-8846144,
8847036-8847203,8847247-8847404
Length = 314
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 452 YMELEEEISRDKKALLEEFERRRKARQLNVSTDDD 556
+ +L ++ +KKALLE+FE RK +S D+
Sbjct: 173 FRDLFSKVEVEKKALLEQFENHRKEETATLSELDN 207
>07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934
Length = 363
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 461 LEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQ 580
L E R +LEE ER+ + R+ + + DE +RS +
Sbjct: 151 LRREWRRQNALMLEEKERKERERRGEIIAEADEFKRSFAE 190
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 563 LPHHHQWTHSVALLCVSSQTLQVVPSYL 480
LP+ W H + LLC SS+ L S L
Sbjct: 851 LPNGQSWRHQMLLLCYSSKILSEANSLL 878
>07_03_0970 - 23034521-23034928,23036173-23037081
Length = 438
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 557 EVRRSLRQLGEPVCLFGEGPAE 622
EV R LR L EPV LFGE A+
Sbjct: 123 EVVRRLRILREPVTLFGEDDAD 144
>05_06_0189 +
26257587-26257791,26257962-26258003,26258064-26258436,
26258515-26258656,26259356-26259514,26259599-26259661,
26259992-26260180
Length = 390
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +2
Query: 464 EEEISRDKKALLEEFERRRKARQ---LNVSTDDDEV 562
EEE DK+ LEEFE+ R+ ++ L++ T++ +V
Sbjct: 247 EEEKEEDKEMTLEEFEKLREEKRKALLSLKTEERKV 282
>05_06_0096 +
25513535-25514024,25514139-25514236,25514395-25514783,
25515485-25515599,25515816-25515917,25516584-25516734,
25517162-25517250,25517518-25517566,25517723-25517763,
25517929-25518116,25518285-25518402,25518900-25519079,
25519172-25519294,25519368-25519455,25519549-25519679,
25519768-25519866,25520822-25521253
Length = 960
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 599 GILAHPTAVSFFLPHHHQWTHSVALLCVSSQTLQVVPSY 483
GI A FL +H+W V LL ++ T VP Y
Sbjct: 411 GIPQKILAFEKFLEENHEWNDKVVLLQIAVPTRTDVPEY 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,387,426
Number of Sequences: 37544
Number of extensions: 186962
Number of successful extensions: 541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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