Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30c17
(622 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF001687-1|AAB87640.1| 521|Homo sapiens U4/U6 snRNP 60 kDa prot... 89 9e-18
BC001588-1|AAH01588.1| 522|Homo sapiens PRP4 pre-mRNA processin... 89 2e-17
AL449305-7|CAI10968.1| 522|Homo sapiens PRP4 pre-mRNA processin... 89 2e-17
AF016369-1|AAC51925.1| 522|Homo sapiens U4/U6 small nuclear rib... 89 2e-17
CR457105-1|CAG33386.1| 521|Homo sapiens PRPF4 protein. 88 2e-17
BC007424-1|AAH07424.1| 521|Homo sapiens PRP4 pre-mRNA processin... 88 2e-17
AY572489-1|AAS78572.1| 521|Homo sapiens 60 kDa U4/U6 snRNP-spec... 88 2e-17
AL449305-8|CAI10969.1| 521|Homo sapiens PRP4 pre-mRNA processin... 88 2e-17
AB209797-1|BAD93034.1| 537|Homo sapiens PRPF4 protein variant p... 88 2e-17
U82756-1|AAC02261.1| 520|Homo sapiens WD splicing factor Hprp4p... 53 9e-07
BC095524-1|AAH95524.1| 291|Homo sapiens taste receptor, type 2,... 30 7.6
AY996330-1|AAY21218.1| 95|Homo sapiens immunoglobulin heavy ch... 30 7.6
AY724962-1|AAU21158.1| 291|Homo sapiens taste receptor T2R16 pr... 30 7.6
AF227139-1|AAF43912.1| 291|Homo sapiens candidate taste recepto... 30 7.6
AC004838-1|AAP21892.1| 291|Homo sapiens unknown protein. 30 7.6
AB199134-1|BAD98013.1| 272|Homo sapiens bitter taste receptor T... 30 7.6
AB199133-1|BAD98012.1| 272|Homo sapiens bitter taste receptor T... 30 7.6
AB199132-1|BAD98011.1| 272|Homo sapiens bitter taste receptor T... 30 7.6
>AF001687-1|AAB87640.1| 521|Homo sapiens U4/U6 snRNP 60 kDa protein
protein.
Length = 521
Score = 89.4 bits (212), Expect = 9e-18
Identities = 49/115 (42%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +2
Query: 281 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 457
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 458 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAE 622
E+EE IS + LL EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAE
Sbjct: 73 EIEEHISERQAELLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127
>BC001588-1|AAH01588.1| 522|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 522
Score = 88.6 bits (210), Expect = 2e-17
Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Frame = +2
Query: 266 SKQKT-TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI 442
S Q T T + D+ +A + K+ ++YGS G+I I
Sbjct: 8 STQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINI 67
Query: 443 -SNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPA 619
S E E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPA
Sbjct: 68 TSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPA 127
Query: 620 E 622
E
Sbjct: 128 E 128
>AL449305-7|CAI10968.1| 522|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 522
Score = 88.6 bits (210), Expect = 2e-17
Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Frame = +2
Query: 266 SKQKT-TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI 442
S Q T T + D+ +A + K+ ++YGS G+I I
Sbjct: 8 STQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINI 67
Query: 443 -SNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPA 619
S E E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPA
Sbjct: 68 TSGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPA 127
Query: 620 E 622
E
Sbjct: 128 E 128
>AF016369-1|AAC51925.1| 522|Homo sapiens U4/U6 small nuclear
ribonucleoprotein hPrp4 protein.
Length = 522
Score = 88.6 bits (210), Expect = 2e-17
Identities = 51/121 (42%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Frame = +2
Query: 266 SKQKT-TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI 442
S Q T T + D+ +A + K+ ++YGS G+I I
Sbjct: 8 STQATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINI 67
Query: 443 -SNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPA 619
S E E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPA
Sbjct: 68 TSGEVFEIEERISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPA 127
Query: 620 E 622
E
Sbjct: 128 E 128
>CR457105-1|CAG33386.1| 521|Homo sapiens PRPF4 protein.
Length = 521
Score = 88.2 bits (209), Expect = 2e-17
Identities = 48/115 (41%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +2
Query: 281 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 457
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 458 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAE 622
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAE
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127
>BC007424-1|AAH07424.1| 521|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 521
Score = 88.2 bits (209), Expect = 2e-17
Identities = 48/115 (41%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +2
Query: 281 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 457
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 458 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAE 622
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAE
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127
>AY572489-1|AAS78572.1| 521|Homo sapiens 60 kDa U4/U6
snRNP-specific spliceosomal protein protein.
Length = 521
Score = 88.2 bits (209), Expect = 2e-17
Identities = 48/115 (41%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +2
Query: 281 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 457
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 458 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAE 622
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAE
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127
>AL449305-8|CAI10969.1| 521|Homo sapiens PRP4 pre-mRNA processing
factor 4 homolog (yeast) protein.
Length = 521
Score = 88.2 bits (209), Expect = 2e-17
Identities = 48/115 (41%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +2
Query: 281 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 457
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 458 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAE 622
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAE
Sbjct: 73 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 127
>AB209797-1|BAD93034.1| 537|Homo sapiens PRPF4 protein variant
protein.
Length = 537
Score = 88.2 bits (209), Expect = 2e-17
Identities = 48/115 (41%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Frame = +2
Query: 281 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 457
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 29 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 88
Query: 458 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAE 622
E+EE IS + +L EFERR++ARQ+NVSTDD EV+ LR LGEP+ LFGEGPAE
Sbjct: 89 EIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAE 143
>U82756-1|AAC02261.1| 520|Homo sapiens WD splicing factor Hprp4p
protein.
Length = 520
Score = 52.8 bits (121), Expect = 9e-07
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Frame = +2
Query: 281 TMSDDEDIAYLKKQKQVHYGSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGDIQI-SNEYM 457
T + D+ +A + K+ ++YGS G+I I S E
Sbjct: 13 TKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVF 72
Query: 458 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAE 622
E+EE + D++ + + DD EV+ LR LGEP+ LFGEGPAE
Sbjct: 73 EIEEISASDRQKYWLSLREGSEPGRSMFPPDDSEVKACLRALGEPITLFGEGPAE 127
>BC095524-1|AAH95524.1| 291|Homo sapiens taste receptor, type 2,
member 16 protein.
Length = 291
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 191 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 84
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 81 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 116
>AY996330-1|AAY21218.1| 95|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 95
Score = 29.9 bits (64), Expect = 7.6
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -3
Query: 170 KNLVFVSINSLKT----CFYCIEMKIYTNNNY 87
KN +F+ INSL+ +YC++ K Y +N Y
Sbjct: 51 KNTLFLQINSLRAEDTAVYYCVKDKYYESNGY 82
>AY724962-1|AAU21158.1| 291|Homo sapiens taste receptor T2R16
protein.
Length = 291
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 191 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 84
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 81 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 116
>AF227139-1|AAF43912.1| 291|Homo sapiens candidate taste receptor
T2R16 protein.
Length = 291
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 191 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 84
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 81 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 116
>AC004838-1|AAP21892.1| 291|Homo sapiens unknown protein.
Length = 291
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 191 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 84
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 81 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 116
>AB199134-1|BAD98013.1| 272|Homo sapiens bitter taste receptor
T2R16 protein.
Length = 272
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 191 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 84
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 72 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 107
>AB199133-1|BAD98012.1| 272|Homo sapiens bitter taste receptor
T2R16 protein.
Length = 272
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 191 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 84
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 72 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 107
>AB199132-1|BAD98011.1| 272|Homo sapiens bitter taste receptor
T2R16 protein.
Length = 272
Score = 29.9 bits (64), Expect = 7.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 191 LVLIKSFKNLVFVSINSLKTCFYCIEMKIYTNNNYI 84
L + F N++ +NSL T FYCI++ +T++ ++
Sbjct: 72 LTITWEFFNILTFWLNSLLTVFYCIKVSSFTHHIFL 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,278,033
Number of Sequences: 237096
Number of extensions: 1105875
Number of successful extensions: 2522
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2522
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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