Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c17
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-3|CAB02270.1|  496|Caenorhabditis elegans Hypothetical pr...    56   2e-08
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41027-4|AAC48196.2|  455|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41027-3|AAQ82846.1|  516|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81074-3|CAB03039.2|  352|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   6.2  
AF149288-1|AAF99087.1|  644|Caenorhabditis elegans KRP85 protein.      28   6.2  
AC024801-1|AAK68513.1|  646|Caenorhabditis elegans Kinesin-like ...    28   6.2  
U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z80215-3|CAB02270.1|  496|Caenorhabditis elegans Hypothetical
           protein C36B1.5 protein.
          Length = 496

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = +2

Query: 440 ISNEYMELEEEI-SRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGE 610
           +S E ME+  +  SR    +  EF+RRR+AR L + TDD +V+  LR L +P+CLFGE
Sbjct: 40  VSLERMEVSNQADSRHDAEMFAEFDRRRRARTLTLPTDDVQVKLKLRALNQPICLFGE 97


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
           protein F59E12.9 protein.
          Length = 1621

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 437 QISNEYMELEEEISRDKKALLE-EFERRRKARQLNVSTDDDE 559
           ++     + EE  S+ +K   E E ER+RK ++++V +DDD+
Sbjct: 152 ELEERNRKAEEAASKRRKREAEVEAERKRKRKEISVDSDDDD 193


>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 434 IQISNEYMELEEEISRDKKALLEEFERRRKARQ 532
           + I NE+ EL  +++RD K  +EEF  + + ++
Sbjct: 146 VSIFNEFDELVAQLNRDGKLKVEEFRTKEEGKE 178


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 434 IQISNEYMELEEEISRDKKALLEEFERRRKARQ 532
           + I NE+ EL  +++RD K  +EEF  + + ++
Sbjct: 160 VSIFNEFDELVAQLNRDGKLKVEEFRTKEEGKE 192


>U41027-4|AAC48196.2|  455|Caenorhabditis elegans Hypothetical
           protein R08E3.3a protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 425 LGDIQISNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRR 568
           +G I   N+ ME + +I  + K    + + + +    N+ TDD+E+RR
Sbjct: 285 MGKIAELNKQMEEDTQIIENTKQANAQKKLQMREELKNLGTDDEEIRR 332


>U41027-3|AAQ82846.1|  516|Caenorhabditis elegans Hypothetical
           protein R08E3.3b protein.
          Length = 516

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 425 LGDIQISNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRR 568
           +G I   N+ ME + +I  + K    + + + +    N+ TDD+E+RR
Sbjct: 285 MGKIAELNKQMEEDTQIIENTKQANAQKKLQMREELKNLGTDDEEIRR 332


>Z81074-3|CAB03039.2|  352|Caenorhabditis elegans Hypothetical
           protein F32B6.3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
 Frame = +2

Query: 431 DIQISNEYMELEEEISRDKKA----LLEEFERRRKAR------QLNVSTDDDEVRRSLRQ 580
           +++ + EY   ++EI+  K+     +L+E   R K        +++  T   E++  LRQ
Sbjct: 37  EMKRNQEYERKQQEIASKKRKVDDEILQESSSRTKPAPVENESEIDEKTPMSEIQTRLRQ 96

Query: 581 LGEPVCLFGE 610
              P+ LFGE
Sbjct: 97  RNHPIMLFGE 106


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/49 (24%), Positives = 29/49 (59%)
 Frame = +2

Query: 449 EYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPV 595
           E+ +++EE  ++ + + +  +   KA++ +     D+VRRSL+ + E +
Sbjct: 743 EFQKVKEEFQKEVEKVKKVEKELEKAKESDFKVYLDDVRRSLKNVRETI 791


>AF149288-1|AAF99087.1|  644|Caenorhabditis elegans KRP85 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 449 EYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEV 562
           E  +LEE+  R  +A+L++  + RK   LN++  D+ +
Sbjct: 519 ELKDLEEDHQRQVEAMLDDIRQLRKELLLNIAIIDEYI 556


>AC024801-1|AAK68513.1|  646|Caenorhabditis elegans Kinesin-like
           protein protein 20 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 449 EYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEV 562
           E  +LEE+  R  +A+L++  + RK   LN++  D+ +
Sbjct: 521 ELKDLEEDHQRQVEAMLDDIRQLRKELLLNIAIIDEYI 558


>U61944-4|AAB03120.1|  891|Caenorhabditis elegans Hypothetical
           protein T12E12.2 protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 440 ISNEYMELEEEISRD---KKALLEEFERRRKARQLNVSTDDD 556
           ++N Y++ ++EI      KKA LEE  R+ +A+  + S + +
Sbjct: 113 VTNRYLKTDDEIEEKRARKKAKLEEQNRKEQAKNPHASAETE 154


>U40941-4|AAA81709.1|  771|Caenorhabditis elegans Hypothetical
           protein F35C8.7a protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 251 SLIININKLK*MPIILIGYVLVLIKSFKNLVFVSINSLKTCFYCIEM--KIYTNNNYILC 78
           SLII I K+  + +  I + L   KS    V   +  LK CF+C+E+  K  T N YI+ 
Sbjct: 573 SLIIAIVKIIRVLLEYIDHKLG--KSQNKAVKWFLMCLKCCFWCLEVFFKFLTKNAYIMI 630

Query: 77  CL 72
            +
Sbjct: 631 AI 632


>U40941-3|AAM51502.1|  730|Caenorhabditis elegans Hypothetical
           protein F35C8.7b protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 251 SLIININKLK*MPIILIGYVLVLIKSFKNLVFVSINSLKTCFYCIEM--KIYTNNNYILC 78
           SLII I K+  + +  I + L   KS    V   +  LK CF+C+E+  K  T N YI+ 
Sbjct: 532 SLIIAIVKIIRVLLEYIDHKLG--KSQNKAVKWFLMCLKCCFWCLEVFFKFLTKNAYIMI 589

Query: 77  CL 72
            +
Sbjct: 590 AI 591


>U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical
           protein C39D10.3b protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 452 YMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEV 562
           Y  + EE++ D  A  EE   R  +R++  S+DDDE+
Sbjct: 165 YHRIIEEVTPDYDATCEEILERITSRKI-ASSDDDEI 200


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 452 YMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEV 562
           Y  + EE++ D  A  EE   R  +R++  S+DDDE+
Sbjct: 282 YHRIIEEVTPDYDATCEEILERITSRKI-ASSDDDEI 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,546,215
Number of Sequences: 27780
Number of extensions: 194669
Number of successful extensions: 666
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)