Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c10
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   3.6  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   4.8  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  

>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 180 SAFPQPPIYYYINKTYNRID 239
           S+F  PPI YY+N  Y+ ++
Sbjct: 369 SSFSLPPIDYYLNGPYDNVE 388


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +1

Query: 259 AKYDS*VGK*NKEFQMSNLELNKYYQN*IINNARIMHRSRTLHNNIIYFHLRSTYYLDID 438
           AK +  +G+ +    +     NKY+    ++ +R   RSR+LH    Y  +R  + +D++
Sbjct: 23  AKEEKPIGRRHTMSPVPATSENKYFGKSPLSGSRKPRRSRSLHKERSY--MRKFFDMDME 80

Query: 439 RKPALRNVQ 465
                 N Q
Sbjct: 81  ESKDFENDQ 89


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = +1

Query: 295 EFQMSNLELNKYYQN*IINNARIMHRSRTLHNNIIYFHLRSTYYLDIDRKPALR---NVQ 465
           EF    L + + YQN   NN +I+  S  L   I + H   +    +D +  L+      
Sbjct: 471 EFDAKFLGVVERYQNQYANNCKILKTSSVL--PIPFAHAIESLLFSLDEENELQVSCAAS 528

Query: 466 GTSRRTLT*Q-FAYFTPVRKIFQG 534
           GT    +  + F+Y T V+K F G
Sbjct: 529 GTLNYLIRHRLFSYSTLVQKGFSG 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,096
Number of Sequences: 5004
Number of extensions: 40758
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)