Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c10
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922...    29   2.1  
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806...    29   2.8  
02_01_0607 - 4549248-4549290,4550193-4550337,4550438-4551185,455...    29   3.7  
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121...    28   6.5  
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472...    28   6.5  
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789     28   6.5  
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445...    28   6.5  
10_03_0033 - 7248131-7248711,7248947-7249079,7249470-7249994,725...    27   8.5  

>03_02_0529 +
           9218734-9218793,9218898-9220050,9220133-9220192,
           9220284-9220363,9220486-9220730,9220815-9221138,
           9221211-9221274,9221968-9222144
          Length = 720

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 394 IIYFHLRSTYYLDIDRKPALRN 459
           ++Y +L S   LD+DRKP+ RN
Sbjct: 333 LLYSYLSSLILLDVDRKPSFRN 354


>03_04_0034 +
           16679624-16679940,16679980-16680199,16680319-16680624,
           16680703-16681044,16681066-16681257,16681533-16681684,
           16681803-16681974,16682017-16682338,16682414-16682862
          Length = 823

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 453 QGWFSINVQIVCGPQMEIYDIVVQCPGSVHDSR 355
           +G  + NV +VC   M    ++   PGSVHD R
Sbjct: 624 KGMTTQNVMVVCDFDMRFTFVLAGWPGSVHDMR 656


>02_01_0607 -
           4549248-4549290,4550193-4550337,4550438-4551185,
           4551504-4551980,4552066-4552374
          Length = 573

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 450 GWFSINVQIVCGPQMEIYDIVVQCPGSVHDSR 355
           G+ S NV  +C   M     V   PGS HDSR
Sbjct: 463 GYTSQNVLAICDFDMRFIFAVAGWPGSAHDSR 494


>12_02_0507 +
           19810446-19811048,19811220-19811466,19811590-19812125,
           19812397-19813620
          Length = 869

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = -2

Query: 441 SINVQIVCGPQMEIYDIVVQCPGSVHDSRXXXXXXXXXXIKFEVRHLKLFIL 286
           S NV  VC   M    ++   PGSVHD R           KF    L  F L
Sbjct: 678 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVFNDAQTRFSAKFPKPPLGKFYL 729


>05_03_0226 -
           10645036-10646001,10646313-10646828,10646905-10647210,
           10647382-10647984
          Length = 796

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = -2

Query: 441 SINVQIVCGPQMEIYDIVVQCPGSVHDSRXXXXXXXXXXIKFEVRHLKLFIL 286
           S NV  VC   M    ++   PGSVHD R           KF    L  F L
Sbjct: 691 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVFNDAQTRFSAKFPKPPLGKFYL 742


>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
          Length = 877

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = -2

Query: 441 SINVQIVCGPQMEIYDIVVQCPGSVHDSRXXXXXXXXXXIKFEVRHLKLFIL 286
           S NV  VC   M    ++   PGSVHD R           KF    L  F L
Sbjct: 680 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVFNDAQTRFSAKFPKPPLGKFYL 731


>04_03_0101 -
           11242252-11243295,11243607-11244131,11244208-11244513,
           11244692-11245231
          Length = 804

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = -2

Query: 441 SINVQIVCGPQMEIYDIVVQCPGSVHDSRXXXXXXXXXXIKFEVRHLKLFIL 286
           S NV  VC   M    ++   PGSVHD R           KF    L  F L
Sbjct: 673 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVFNDAQTRFSAKFPKLPLGKFYL 724


>10_03_0033 -
           7248131-7248711,7248947-7249079,7249470-7249994,
           7250545-7250764,7250913-7251145
          Length = 563

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 441 SINVQIVCGPQMEIYDIVVQCPGSVHDSR 355
           S NV  VC   M    ++   PGSVHD R
Sbjct: 464 SQNVMFVCDFDMRFTFVLAGWPGSVHDMR 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,345,489
Number of Sequences: 37544
Number of extensions: 215465
Number of successful extensions: 474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)