Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c10
         (595 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   1.8  
AY330179-1|AAQ16285.1|  171|Anopheles gambiae odorant-binding pr...    23   5.6  
AY330172-1|AAQ16278.1|  170|Anopheles gambiae odorant-binding pr...    23   9.8  
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    23   9.8  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 370 RSRTLHNNIIYFHLRSTYYLDIDRKPALRNVQGTSRRTLT*QFAYFTPVRKIFQGRLIG 546
           RS  LH+ ++Y  L+S+Y   +     L N+     + L  Q  +    ++I + R+ G
Sbjct: 305 RSFHLHHELLYRGLKSSYERYLSDPNELTNINRIKGKMLLLQRRFSEDFKRINETRVCG 363


>AY330179-1|AAQ16285.1|  171|Anopheles gambiae odorant-binding
           protein AgamOBP53 protein.
          Length = 171

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 451 RLVFYQCPNSMWTAN 407
           R  F  CPNS W A+
Sbjct: 144 RTTFSNCPNSRWKAS 158


>AY330172-1|AAQ16278.1|  170|Anopheles gambiae odorant-binding
           protein AgamOBP52 protein.
          Length = 170

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 466 LERSSRLVFYQ-CPNSMWTAN 407
           ++R  RL+ Y+ CP + W+A+
Sbjct: 137 VDRCVRLLIYENCPTARWSAS 157


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 466 LERSSRLVFYQ-CPNSMWTAN 407
           ++R  RL+ Y+ CP + W+A+
Sbjct: 239 VDRCVRLLIYENCPTARWSAS 259


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 565,716
Number of Sequences: 2352
Number of extensions: 10100
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)