Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c05
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   0.94 
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   3.8  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   6.6  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
 Frame = +1

Query: 334 LITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVL-CTGKYAPAVKMDTNYGVI------ 492
           L+ K+GV+ L+ K KLP++V  +  ++     + L    K+     +D+ Y V+      
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMIIAGGRKEFLELLDKFEMLDMLDSGYPVVVPSLTG 601

Query: 493 EELN-KKLAFASESLXRGQRKNY 558
            ++N K  +FA   +   +++N+
Sbjct: 602 SDVNTKDSSFAERHIIDPEKRNF 624


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +1

Query: 100 EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYT 273
           E +FTL+ ++E G  + +    DIA +L++++ +Q         Y+  Y+  G+ P++
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQIRTQYEGSGYR--YNSLGAWPFS 441


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 296 LTTLSGAGVYGIDPDSLYVVLYFLS 222
           L+ L+    Y +DPD +Y +L FLS
Sbjct: 800 LSALASTIGYKLDPDDVYNILSFLS 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,598
Number of Sequences: 5004
Number of extensions: 46070
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)