Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30c05
(619 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49356-1|AAA90924.1| 2285|Homo sapiens DNA polymerase epsilon ca... 30 7.5
BC087613-1|AAH87613.1| 797|Homo sapiens POLE protein protein. 30 7.5
BC021559-1|AAH21559.1| 370|Homo sapiens POLE protein protein. 30 7.5
BC007599-1|AAH07599.1| 797|Homo sapiens Unknown (protein for IM... 30 7.5
AY273166-1|AAP12650.1| 2265|Homo sapiens polymerase (DNA directe... 30 7.5
AK025087-1|BAB15063.1| 370|Homo sapiens protein ( Homo sapiens ... 30 7.5
S60080-1|AAA15448.1| 2257|Homo sapiens DNA polymerase epsilon ca... 29 9.9
L09561-1|AAC19148.1| 2286|Homo sapiens DNA polymerase epsilon, c... 29 9.9
CR456604-1|CAG30490.1| 605|Homo sapiens Em:U62317.2 protein. 29 9.9
BC014939-1|AAH14939.2| 532|Homo sapiens NCAPH2 protein protein. 29 9.9
BC009441-1|AAH09441.1| 556|Homo sapiens non-SMC condensin II co... 29 9.9
BC001937-1|AAH01937.1| 555|Homo sapiens non-SMC condensin II co... 29 9.9
BC001833-1|AAH01833.1| 249|Homo sapiens non-SMC condensin II co... 29 9.9
BC001509-1|AAH01509.1| 249|Homo sapiens non-SMC condensin II co... 29 9.9
BC001298-1|AAH01298.1| 539|Homo sapiens NCAPH2 protein protein. 29 9.9
BC000473-1|AAH00473.1| 249|Homo sapiens non-SMC condensin II co... 29 9.9
AF127975-3|AAD44692.1| 2243|Homo sapiens DNA polymerase epsilon ... 29 9.9
AF127975-2|AAD44691.1| 2286|Homo sapiens DNA polymerase epsilon ... 29 9.9
AF127975-1|AAD44690.1| 2297|Homo sapiens DNA polymerase epsilon ... 29 9.9
>U49356-1|AAA90924.1| 2285|Homo sapiens DNA polymerase epsilon
catalytic subunit protein.
Length = 2285
Score = 29.9 bits (64), Expect = 7.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 2180 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCSCAG 2239
Query: 580 D 582
D
Sbjct: 2240 D 2240
>BC087613-1|AAH87613.1| 797|Homo sapiens POLE protein protein.
Length = 797
Score = 29.9 bits (64), Expect = 7.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 692 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCSCAG 751
Query: 580 D 582
D
Sbjct: 752 D 752
>BC021559-1|AAH21559.1| 370|Homo sapiens POLE protein protein.
Length = 370
Score = 29.9 bits (64), Expect = 7.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 265 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCSCAG 324
Query: 580 D 582
D
Sbjct: 325 D 325
>BC007599-1|AAH07599.1| 797|Homo sapiens Unknown (protein for
IMAGE:3347229) protein.
Length = 797
Score = 29.9 bits (64), Expect = 7.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 692 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCSCAG 751
Query: 580 D 582
D
Sbjct: 752 D 752
>AY273166-1|AAP12650.1| 2265|Homo sapiens polymerase (DNA directed),
epsilon protein.
Length = 2265
Score = 29.9 bits (64), Expect = 7.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 2160 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCSCAG 2219
Query: 580 D 582
D
Sbjct: 2220 D 2220
>AK025087-1|BAB15063.1| 370|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21434 fis, clone COL04242. ).
Length = 370
Score = 29.9 bits (64), Expect = 7.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 265 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCSCAG 324
Query: 580 D 582
D
Sbjct: 325 D 325
>S60080-1|AAA15448.1| 2257|Homo sapiens DNA polymerase epsilon
catalytic subunit protein.
Length = 2257
Score = 29.5 bits (63), Expect = 9.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 2152 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCTCAG 2211
Query: 580 D 582
D
Sbjct: 2212 D 2212
>L09561-1|AAC19148.1| 2286|Homo sapiens DNA polymerase epsilon,
catalytic polypeptide protein.
Length = 2286
Score = 29.5 bits (63), Expect = 9.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 2181 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCTCAG 2240
Query: 580 D 582
D
Sbjct: 2241 D 2241
>CR456604-1|CAG30490.1| 605|Homo sapiens Em:U62317.2 protein.
Length = 605
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKE 348
NVD K T SE IP P APD + K +PLY + VL +++
Sbjct: 130 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK 177
>BC014939-1|AAH14939.2| 532|Homo sapiens NCAPH2 protein protein.
Length = 532
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKE 348
NVD K T SE IP P APD + K +PLY + VL +++
Sbjct: 57 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK 104
>BC009441-1|AAH09441.1| 556|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 556
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKE 348
NVD K T SE IP P APD + K +PLY + VL +++
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK 127
>BC001937-1|AAH01937.1| 555|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 555
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKE 348
NVD K T SE IP P APD + K +PLY + VL +++
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK 127
>BC001833-1|AAH01833.1| 249|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 249
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKE 348
NVD K T SE IP P APD + K +PLY + VL +++
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK 127
>BC001509-1|AAH01509.1| 249|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 249
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKE 348
NVD K T SE IP P APD + K +PLY + VL +++
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK 127
>BC001298-1|AAH01298.1| 539|Homo sapiens NCAPH2 protein protein.
Length = 539
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKE 348
NVD K T SE IP P APD + K +PLY + VL +++
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK 127
>BC000473-1|AAH00473.1| 249|Homo sapiens non-SMC condensin II
complex, subunit H2 protein.
Length = 249
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 217 NVDKKYKTTYSESGSIPYTP----APDNVVKQGDPLYLQPHTVLITKE 348
NVD K T SE IP P APD + K +PLY + VL +++
Sbjct: 80 NVDLKNDQTPSEVLIIPLLPMALVAPDEMEKNNNPLYSRQGEVLASRK 127
>AF127975-3|AAD44692.1| 2243|Homo sapiens DNA polymerase epsilon
catalytic subunit protein isoform c protein.
Length = 2243
Score = 29.5 bits (63), Expect = 9.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 2138 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCTCAG 2197
Query: 580 D 582
D
Sbjct: 2198 D 2198
>AF127975-2|AAD44691.1| 2286|Homo sapiens DNA polymerase epsilon
catalytic subunit protein isoform b protein.
Length = 2286
Score = 29.5 bits (63), Expect = 9.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 2181 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCTCAG 2240
Query: 580 D 582
D
Sbjct: 2241 D 2241
>AF127975-1|AAD44690.1| 2297|Homo sapiens DNA polymerase epsilon
catalytic subunit protein isoform a protein.
Length = 2297
Score = 29.5 bits (63), Expect = 9.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Frame = +1
Query: 421 VIPQVLCTGKYAPAVKMDTNYGVIEELNKKL-AFASESL----XRGQRKNY--TFCQCVG 579
V+PQ LC+ AP ++E L KKL AF + L RG ++ +C C G
Sbjct: 2192 VLPQWLCSNCQAPYDSSAIEMTLVEVLQKKLMAFTLQDLVCLKCRGVKETSMPVYCTCAG 2251
Query: 580 D 582
D
Sbjct: 2252 D 2252
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,381,491
Number of Sequences: 237096
Number of extensions: 1705644
Number of successful extensions: 3556
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3556
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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