Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c04
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc...    85   4e-18
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   3.3  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.7  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   7.5  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    24   9.9  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   9.9  

>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
           Nop10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 64

 Score = 85.4 bits (202), Expect = 4e-18
 Identities = 38/60 (63%), Positives = 46/60 (76%)
 Frame = +1

Query: 109 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 288
           M+L YYLND+G R YTL  + P G+ T S+HPARFSP+DKYSR R  +KKRF +LLTQ P
Sbjct: 1   MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 375 LKIIVKMYQNLDHFGNFQCKSIFILMNRFRLLCKQQAKSLLD 250
           LK +    QNL H    Q KS F+ +++  L   QQ + L+D
Sbjct: 314 LKRLSSEQQNLQHEQILQWKSDFLNVSKDHLKVLQQLRPLID 355


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 345 LDHFGNFQCKSIFILMNR 292
           +D FGN+ C+ +F+  +R
Sbjct: 508 IDPFGNYMCQKLFVYASR 525


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 324 QCKSIFILMNRFRLLCKQQAKSLL 253
           +C+++F    +FRL  KQ+  SLL
Sbjct: 217 ECEALFTYPEKFRLYHKQEKYSLL 240


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = -3

Query: 262 ISS*LLFCVLSICLQEKNELDV----LTMLVFQMGRWSLMCTLY 143
           +SS ++F +L + +  K  L++    L ML FQM   SLM  +Y
Sbjct: 93  VSSQIVFAIL-VTILNKQALNIINAPLLMLSFQMAFTSLMVKMY 135


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 266 PNLFLIIILCLEYLSSGEKRA 204
           PN++L+I  CL+Y     KR+
Sbjct: 18  PNIYLLISGCLQYFYEVRKRS 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,784
Number of Sequences: 5004
Number of extensions: 36333
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)