Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c04
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264...    31   0.60 
09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495...    29   1.8  
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    29   1.8  
03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967...    27   7.4  
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41...    27   9.8  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    27   9.8  

>12_02_0910 +
           24225180-24225415,24225523-24225678,24226387-24226450,
           24226738-24226947,24227678-24227866,24228044-24228342,
           24228575-24228851,24229045-24229317,24230316-24230549,
           24230707-24230856
          Length = 695

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +1

Query: 229 YSRHRIIIKKRFGLLLTQQPEPIH*NKY*FALKITKMV*ILIHFNNYFQNLKHTGFI*HT 408
           Y  ++ I  KR    +T +P P H      A+ +T  V +    + +F+    + ++ HT
Sbjct: 151 YYEYKYISGKRLEYFMTSKPLPQHFTVLVRAIPVTNGVSVSDAVDKFFKEYHSSTYLSHT 210

Query: 409 TEHKSSYKRNIL 444
             H++   R +L
Sbjct: 211 VVHQTGKLRRLL 222


>09_02_0146 +
           4953007-4953297,4954105-4954341,4954592-4954669,
           4954991-4955167,4955705-4955761,4955988-4956174,
           4956910-4957055,4957213-4957395,4957860-4957970,
           4959386-4959505,4959596-4959740,4960001-4960164,
           4960816-4960902,4961062-4961390,4963426-4963507,
           4963616-4963746,4963976-4964225,4965112-4965393,
           4966780-4966986
          Length = 1087

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -1

Query: 426 RAFVFCCMLYKSCVL*ILKIIVKMYQNLDHFGNFQCKSI--FILMNRFRLLCKQQAKSLL 253
           RAF+F C +    VL  L  +V   +     G F   ++  +I+ N F +L    +K +L
Sbjct: 702 RAFMFLCFIP---VLLFLAFLVFTREQNPPLGTFLLVTMMCYIVANGFTILLILSSKLIL 758

Query: 252 DYYSVS*VFVFRRKTSW 202
              ++  VF+ RR  SW
Sbjct: 759 YVAAILHVFIKRRWQSW 775


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -1

Query: 411 CCMLYKSCVL*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFRLLCKQQAKSLLDYY 244
           CC      +  +L+++  +Y  L  +   QCK        F  +C   A  LLD +
Sbjct: 87  CCDFCGEPLRFVLQVVFHLYDKLQVYAPIQCKETAYHRTLFVFMCPSMACLLLDQH 142


>03_03_0028 +
           13893813-13893959,13894961-13895264,13896557-13896761,
           13897428-13897646,13897734-13897869,13899130-13899387,
           13899402-13899686
          Length = 517

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 220 EDKYSRHRIIIKKRFGLL 273
           E+KYSR RI++ K FGL+
Sbjct: 250 EEKYSRARIMLAKVFGLI 267


>05_01_0060 -
           418559-418577,418655-418738,418857-418966,419467-419577,
           419914-419992,420182-420264,420347-420439,420902-421810
          Length = 495

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 275 LHNNLNLFIKINIDLH*KLPKWSKF 349
           LH NL LF+++NI L  K P W+ F
Sbjct: 297 LHQNLVLFMELNICLSCK-PGWTSF 320


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 247  LFCVLSICLQEKNELDVLTMLVFQMGRWSLMCTL 146
            LF VL++C ++KN  + L     QM +WSL+  +
Sbjct: 1817 LFSVLAVCEKQKNPGEALLNKAKQM-QWSLLAMI 1849


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,573,257
Number of Sequences: 37544
Number of extensions: 189541
Number of successful extensions: 343
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)