Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30c04
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-4|CAB02768.2|   64|Caenorhabditis elegans Hypothetical pr...    83   1e-16
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    30   0.71 
Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    27   8.8  
AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z81038-4|CAB02768.2|   64|Caenorhabditis elegans Hypothetical
           protein C25A1.6 protein.
          Length = 64

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 38/63 (60%), Positives = 49/63 (77%)
 Frame = +1

Query: 109 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 288
           M+LRY+L++   R YTL    P G+ TL+AHPARFSPEDK S++RIIIKKRFGLL TQ+ 
Sbjct: 1   MFLRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQKA 60

Query: 289 EPI 297
           + +
Sbjct: 61  KTV 63


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 438 ISFVRAFVFCCMLYKSCVL*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFR 286
           I+F+   +     YK C    L II  +  +L HF +  C++ F   N FR
Sbjct: 219 INFILFIIIIANKYKKCYKNFLLIIYSLLNSLTHFSSTNCEN-FEKKNSFR 268


>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +3

Query: 243 NNNQEEIWPAAYTTT*TYSLK*ILICIENYQNGLNFDTF*QLFSKSKAHRIYITYNRTQK 422
           NN Q E  PA Y    +Y  K +    + YQN  +++T  ++  KSK           Q+
Sbjct: 192 NNVQVECCPAPYDCDASYEAKEV----DKYQNNNDYETSHKVLVKSKYEGPAAADKTEQE 247

Query: 423 LLQKKYITLL*K 458
            + KK +  L K
Sbjct: 248 FVAKKIMLSLKK 259


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +3

Query: 243 NNNQEEIWPAAYTTT*TYSLK*ILICIENYQNGLNFDTF*QLFSKSKAHRIYITYNRTQK 422
           NN Q E  PA Y    +Y  K +    + YQN  +++T  ++  KSK           Q+
Sbjct: 192 NNVQVECCPAPYDCDASYEAKEV----DKYQNNNDYETSHKVLVKSKYEGPAAADKTEQE 247

Query: 423 LLQKKYITLL*K 458
            + KK +  L K
Sbjct: 248 FVAKKIMLSLKK 259


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 441 YISFVRAFVFCCMLYKSCVL*IL 373
           ++ F    VFCC++Y  CVL +L
Sbjct: 269 WLIFAFPMVFCCLIYCWCVLYLL 291


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 441 YISFVRAFVFCCMLYKSCVL*IL 373
           ++ F    VFCC++Y  CVL +L
Sbjct: 269 WLIFAFPMVFCCLIYCWCVLYLL 291


>AL022270-2|CAB63433.2|  952|Caenorhabditis elegans Hypothetical
            protein C26G2.2 protein.
          Length = 952

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 121  YYLNDKGDREYTLATIDPFGKPTLSAHPARFSP 219
            +YL  KG  E     +D     TLS  P+ FSP
Sbjct: 916  FYLKKKGVLEQLFRKLDRMKCNTLSTQPSAFSP 948


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,132,801
Number of Sequences: 27780
Number of extensions: 201163
Number of successful extensions: 422
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)