Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30b24
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0229 - 2897484-2900402 32 0.31
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 31 0.96
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 30 1.3
12_02_0371 - 18187169-18188386 30 1.7
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 29 2.2
07_01_0177 + 1247937-1249067 29 2.9
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43... 29 2.9
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 28 6.8
06_01_1076 - 8778210-8778734 28 6.8
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 28 6.8
02_04_0372 + 22448908-22449038,22450130-22450197,22451812-22452029 28 6.8
12_01_0661 + 5596739-5597047,5597125-5597703 27 8.9
01_06_0639 + 30772804-30772904,30773386-30775675 27 8.9
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232 27 8.9
>04_01_0229 - 2897484-2900402
Length = 972
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 411 INNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNNFEG 575
I N +LTN +SDH G+ L++ + G GE + ++ N+ N+ EG
Sbjct: 499 IGTSNKDLTNKSSDHVEGNESDLNDNSSGHGEGIGSGNKHLS----NNFLNHVEG 549
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = +3
Query: 306 NTKNKSKKTKDLSQADELCIKSQEHLNETLANTL---HIN-NINSNLTNGTSDHSNGSSE 473
+ +N++++ +D LC++ + ETL N + N +N++++ G S ++G S
Sbjct: 96 DNQNETQRPPSEWSSDVLCLRFAYRMEETLINMFLSGYSNAEVNADISLGDSQINDGDSS 155
Query: 474 VLSEKADGQGETVNKVTNDVNSVQHNDTSNNFEGKKTT 587
+E G + N ++ ++ H T + + + +T
Sbjct: 156 ETAENKPGNFASENAPSSPCDASLH-QTEDELQNENST 192
>05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/92 (21%), Positives = 44/92 (47%)
Frame = +3
Query: 306 NTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSE 485
NT+ + K++ Q DE I S+++L+ + +NS+ +G + + + +
Sbjct: 1129 NTQEHEEPLKNIGQDDET-ISSKDNLH---------HGLNSSNNSGGAGETELLDDFIEP 1178
Query: 486 KADGQGETVNKVTNDVNSVQHNDTSNNFEGKK 581
+ D T +V +D+N + D ++F +K
Sbjct: 1179 ELDNVENTEQRVIDDINITESGDMESSFADQK 1210
>12_02_0371 - 18187169-18188386
Length = 405
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/89 (24%), Positives = 38/89 (42%)
Frame = +3
Query: 315 NKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSEKAD 494
N+ ++T+ L Q + QE L + N N+N + T++H + S KA
Sbjct: 220 NQRQRTEPL-QITGSSVVHQEFLPQEDERNADNNTSNTNDDDTTNNHGSCPISDHSNKAC 278
Query: 495 GQGETVNKVTNDVNSVQHNDTSNNFEGKK 581
V + +N ND +NF+ +K
Sbjct: 279 NVSSIHQDVNDSINVGTQNDNLSNFDAEK 307
>10_08_1005 -
22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 29.5 bits (63), Expect = 2.2
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = +3
Query: 267 ADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANT-----LHINNINSN 431
A NN+ + C + ++ NK+ + ++D + + H T T + ++ N
Sbjct: 311 AQNNLAHQPCEKASS-NKTVERSLGGKSDPSVLGGERHSMMTSCGTSNRDKIKAGSLTKN 369
Query: 432 LTNGTSDHSNGSSEVLSEKADGQ-GETVNKVTND 530
L NGTS NGS E AD Q + VN+ ND
Sbjct: 370 LENGTSCSRNGS----LEHADIQSNDAVNRNDND 399
>07_01_0177 + 1247937-1249067
Length = 376
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 387 ETLANTLH--INNINSNLTNGTSDHSNGSSEVLSEKADGQG--ETVNKV 521
ETL T H ++N N N + + +NGS DG+G ETV+ V
Sbjct: 237 ETLVKTSHSVLSNPNPNANSNQNGSNNGSGSGSGNGGDGEGWVETVSTV 285
>06_01_0047 -
429838-429960,430413-430508,430589-430596,431088-431141,
431226-431274,431368-431466,431560-431639,431926-431989,
432082-432255,432342-432965,433046-433189,433262-433372,
433442-433498,433664-433798
Length = 605
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 273 NNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSN 431
NN N +C ++ N D+ D L + S LN+ + H+N I++N
Sbjct: 29 NNDDNYQCD--SSDNSDSNHMDVPSQDHLNVISTNDLNDMDVSQPHVNEISTN 79
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +3
Query: 267 ADNNVQNIKCSQMNTKNKSKKTKDL--SQADELCIKSQEHLNETLANTLHINNINSNLTN 440
A VQ +K + + ++L +L + ETLA L++++
Sbjct: 117 ASPKVQMLKSVPFRSAGSKRPAQELLPKAQPQLFESVRSKFRETLAAALNMDSDQQCAPQ 176
Query: 441 GTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNN 566
S+ S +++ADG G T+ + S QHN S+N
Sbjct: 177 SVETVSHVGSASENKQADGAGIDSVTETSALKSGQHNMLSSN 218
>06_01_1076 - 8778210-8778734
Length = 174
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 179 THLLLVKFIEEYHRHLGKLICHLKLHSSWCL 87
TH + +KF+ YHRH + LKL SW L
Sbjct: 36 THGIHLKFVRLYHRH---HLASLKLKVSWVL 63
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 435 TNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNNFEGKKTTMP 593
+NGTS + NG + + A +T NK D N + +TS EG +P
Sbjct: 525 SNGTSSNDNGHAMSVENNASEVADTDNK--EDCN-LDGQNTSGRIEGPSEEIP 574
>02_04_0372 + 22448908-22449038,22450130-22450197,22451812-22452029
Length = 138
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +3
Query: 363 IKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSV 542
I+ +H+N T+ + NN +L TS S GSS + D + + + T V +V
Sbjct: 43 IRLNQHINFTVPIAYNYNNTADHLVKNTSMSSRGSSTERGLE-DSKKKLDEEKTKKVEAV 101
Query: 543 QHNDTS 560
Q S
Sbjct: 102 QVGSNS 107
>12_01_0661 + 5596739-5597047,5597125-5597703
Length = 295
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +3
Query: 297 SQMNTKNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSNLTNGT 446
S +N N D+ D+ ++ + LN H NN N N ++ T
Sbjct: 150 SPVNVANLDGLDNDMEDNDDTQLEEESPLNRNKKRPRHANNANKNKSSRT 199
>01_06_0639 + 30772804-30772904,30773386-30775675
Length = 796
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = +3
Query: 369 SQEHLNETLANTLHINNINSNLTNGTSDHSNGS--SEVLSEKADGQGETVNKVTNDVNSV 542
+ E+ N + N H N G + + + S +S K D QG + N SV
Sbjct: 302 TSEYPNPSRFNKEHAANFQQGYNGGIGHNVSHAPQSPYVSSKIDAQGNFPGQPMNVNRSV 361
Query: 543 QHN 551
QHN
Sbjct: 362 QHN 364
>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
Length = 549
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/74 (20%), Positives = 33/74 (44%)
Frame = +3
Query: 339 LSQADELCIKSQEHLNETLANTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNK 518
+S AD+ N + + + +SN+T T D S+ +++ + + + +T
Sbjct: 199 VSSADQTVKLEGPTCNSSQITGWYSKDSSSNITETTWDSSSNTTQTTWDSSSNKTQTTTL 258
Query: 519 VTNDVNSVQHNDTS 560
D N+ + N +S
Sbjct: 259 AALDTNASKQNSSS 272
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,652
Number of Sequences: 37544
Number of extensions: 216311
Number of successful extensions: 572
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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