Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b24
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    31   0.007
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.11 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.44 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 2/109 (1%)
 Frame = +3

Query: 258 NKVADN-NVQNIKCSQMNT-KNKSKKTKDLSQADELCIKSQEHLNETLANTLHINNINSN 431
           N+ ADN N  N      N  K    +  D  Q D     ++++ N+   N  + N  N N
Sbjct: 434 NQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGN 493

Query: 432 LTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNNFEGK 578
             NG   + N  +          G   N   N+ N    ND   +   K
Sbjct: 494 RQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHHSSK 542


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 384 NETLANTLHINNINSNLTNGTSDHSNGS 467
           N   +N  + NN N+N  NG +D+ NG+
Sbjct: 234 NTNASNNNNNNNNNNNNNNGANDNGNGN 261



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/50 (20%), Positives = 24/50 (48%)
 Frame = +3

Query: 399 NTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQH 548
           +T+   N N+N +N  ++++N ++       +G G   +   N+ +   H
Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCH 275



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 396 ANTLHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDV 533
           ANT   NN N+N  N  ++++NG+    ++  +G G + N    D+
Sbjct: 233 ANTNASNNNNNN--NNNNNNNNGA----NDNGNGNGASNNNNNGDM 272


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +3

Query: 255 MNKVADNNVQNIKCSQMNTKNKSKKTKDLSQADELCIKSQEHLNE---TLANTLHINNIN 425
           +N+   + + N + S  NT+NKS    D+ +    C      L E    L +  HIN   
Sbjct: 169 INRKNSDYLDNQEVSMENTENKSCTDSDIEKYKMFCNLENVKLKELRIILEDIKHINT-R 227

Query: 426 SNLTNG 443
            N  NG
Sbjct: 228 HNTKNG 233


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 414 NNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKV 521
           +N+N+N  NG ++ S   S    E       ++N V
Sbjct: 536 SNVNNNSGNGNTNSSARDSSPAIESISVDSGSINTV 571


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 405 LHINNINSNLTNGTSDHSNGSSEVLSEKADGQGETVNKVTNDVNSVQHNDTSNNF-EGKK 581
           + INN N+N TN   D+      V  +K +      +K  N+  SV  N T   F EG+K
Sbjct: 132 MSINNTNNNNTNKYKDYYIWVDPVKDDKGN---PIKDKYPNNWLSV-FNGTGWTFHEGRK 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,956
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)