Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30b18
(257 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 25 1.3
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 1.7
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 2.2
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 25 2.2
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 2.2
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 2.2
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 24 2.9
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 24 2.9
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 24 3.8
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 23 5.1
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 23 5.1
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 23 6.7
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 23 6.7
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 23 6.7
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 23 6.7
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 23 6.7
SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ... 23 6.7
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 23 8.9
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 23 8.9
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 23 8.9
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 23 8.9
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 1.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 59 PCGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSK 181
P GK ++ K R+D D D E+N +L + S + S+
Sbjct: 21 PLGKDSQSSSKPKKRFDDEEDEDE-EENKESLQNDSHSVSQ 60
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 1.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 62 CGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVEGLR--LKRNGAYSVSE 235
C E R +AP+ +G DG G + S+P + VN+ G L G + V E
Sbjct: 1190 CSILSERRSRAPYGMNGGEDGAMGVNTWIDCSNPDFPR-YVNLGGKNHVLMGKGDHIVIE 1248
Query: 236 T 238
T
Sbjct: 1249 T 1249
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 2.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 83 RRKAPHRYDGSSDGDA-GEDNSRTLSSPSIAQSKVNVEGLRLK 208
RRK SSD D+ EDN +P S +++E L K
Sbjct: 1053 RRKKMMASKNSSDSDSDSEDNFLASLTPKTNSSSISIENLPRK 1095
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 2.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 93 RHIVMMVAAMVTQGRTIPV 149
+H++M VAA++T G PV
Sbjct: 22 KHVLMEVAAIITDGNLRPV 40
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 2.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 107 HNDVALSASSPGTFHRVSMSYKNSHVTPKVE 15
H D L SPG F R + +S+ KV+
Sbjct: 130 HGDKLLKQLSPGDFERAQLGLGHSYSRAKVK 160
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 153 CHRLALLRAKSMLKGFGSNEMGLTRFRKPIKIK 251
C L+R ++LKG G+N + ++ +K K
Sbjct: 538 CQTSRLMREVAILKGLGNNHPHIVKYLDFVKTK 570
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 24.2 bits (50), Expect = 2.9
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 122 GDAGEDNSRTLSSPSIAQSK-VNVEGLRLKRNGAYSVSETY 241
G+A +D R +SPS+A K + G+ + Y ++E +
Sbjct: 282 GEAAQDPERFTTSPSLAIPKALKHAGIEASQVDYYEINEAF 322
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 2.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 146 GNCPPLRHHRCYHHNDVALSASSPG 72
G+ + +RCYHH + L++ G
Sbjct: 155 GSAYKISRNRCYHHGTMLLNSDLEG 179
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +2
Query: 47 NSYSPCGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQS 178
N S P T A + + D GEDN T+ + ++ S
Sbjct: 343 NHSSQIRDHPSTNNNASSYQNFNETSDEGEDNDATIRANNVRSS 386
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 177 AKSMLKGFGSNEMGLTRFRKPIKIKKK 257
++S L+ G E+GL +R ++IKK+
Sbjct: 410 SQSDLEHVGMCELGLKNYRAALEIKKR 436
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 75 GDFPQGEYELQELACDPES 19
GDF Q EL + C P+S
Sbjct: 212 GDFNQALMELGAITCTPQS 230
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 23.4 bits (48), Expect = 5.1
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 11 PVQLSGSHASSCNSYS 58
P+++ +HAS CN Y+
Sbjct: 1223 PIKVISAHASKCNVYA 1238
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 23.0 bits (47), Expect = 6.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 8 QPVQLSGSHASSCNSYSPCGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSI 169
Q V S ASS SYS +P K+ Y + G + ++ SS S+
Sbjct: 650 QGVARETSSASSYRSYSQRASTPAVTAKSSFHYATPTSGLSNFNSVTPSSSASL 703
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 47 NSYSPCGKSPET-RRKAPHRYDGSSDGDAGEDNS 145
N+YSP KSP RR + + +S G N+
Sbjct: 175 NNYSPAVKSPAAQRRSSSYMVPANSRGSPANYNT 208
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 23.0 bits (47), Expect = 6.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Frame = +2
Query: 167 IAQSKVNVEGLRLKRNGAYSVSETYKN 247
+ ++K+N+ G+ KR TY N
Sbjct: 889 VKKTKINLNGINYKRQSGLRELNTYPN 915
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 95 PHRYDGSSDGDAGEDNSRTLSSPS-IAQSKVNVE 193
P +DG DG+ E+ +SS S I S+ ++E
Sbjct: 294 PASHDGEVDGEVKEEEENKVSSSSNIEASQSSLE 327
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 89 KAPHRYDGSSDGDAGEDNSRTLSSPS 166
K+ DG +D D+ NS T SP+
Sbjct: 205 KSEENEDGVTDNDSSNVNSSTNESPN 230
>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 18 NFRGHMRVLVTHTHPVESPRRRGGK 92
++RGH+RVL+ + V+ P + G +
Sbjct: 81 DYRGHVRVLLFNYSDVDFPIKVGDR 105
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 22.6 bits (46), Expect = 8.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 116 SDGDAGEDNSRTLSSPSIAQSKVNVEGLRLKRNGAY 223
SDG A E+N S S+ E LR ++G Y
Sbjct: 134 SDGPASENNVVKEDDKSSISSEDEEEELRSAKDGIY 169
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 173 EQC*AMTTYGNCPPLRHHRCYHHN 102
EQ TT+G PP+ H Y +N
Sbjct: 82 EQSRKCTTFGLDPPISAHLFYTYN 105
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 22.6 bits (46), Expect = 8.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 41 SCNSYSPCGKSPETRRKAPHRYDGS--SDGDAGEDNSRTLSSPSIAQSKVNV 190
+ NS S C ++P T + R+DG + A E+ R L+ +A+ K+NV
Sbjct: 152 NANSSSTCTRTPPTSGRFSIRHDGQVCNITIAAEETLRQLAQ-QVAE-KMNV 201
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 22.6 bits (46), Expect = 8.9
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 17 QLSGSHASSCNSYSPCGKSPETRRKAPHRYDGSSDGDAGED-NSRTLSSPSI 169
Q +GSHASS +P + + + P + S D+ N+ T S ++
Sbjct: 265 QKNGSHASSVAPGTPSSLASVSTQATPQHQNSSGRTDSFHSLNTETPSKSTV 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,113,473
Number of Sequences: 5004
Number of extensions: 19787
Number of successful extensions: 76
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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