Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b18
         (257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical pr...    32   0.065
Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical pr...    32   0.065
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    27   1.8  
AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transpor...    27   1.8  
Z46794-1|CAA86782.1|  367|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Y10114-1|CAA71200.1|  367|Caenorhabditis elegans histone RNA hai...    27   2.4  
AB060649-1|BAB83255.1|  367|Caenorhabditis elegans histone stem-...    27   2.4  
Z77135-4|CAB00877.2|  320|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    25   5.6  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    25   5.6  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81086-8|CAB54255.1|   57|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    25   9.8  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    25   9.8  

>Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 31.9 bits (69), Expect = 0.065
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 47  NSYSPCGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIA 172
           +S        ET+R+AP   D  SD DAG    + LS+ S A
Sbjct: 2   SSSESASSDEETKRRAPATSDSDSDSDAGPKPGKPLSTDSSA 43


>Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 31.9 bits (69), Expect = 0.065
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 47  NSYSPCGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIA 172
           +S        ET+R+AP   D  SD DAG    + LS+ S A
Sbjct: 2   SSSESASSDEETKRRAPATSDSDSDSDAGPKPGKPLSTDSSA 43


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
           complex protein protein7 protein.
          Length = 1217

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 53  YSPCGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNV 190
           +S  G+       A    DG    D G  NS + SSPS + +  N+
Sbjct: 9   FSSVGRFFSVGASATKSKDGDKSNDEGTSNSSSKSSPSASPALKNI 54


>AC025721-7|AAK29911.3|  668|Caenorhabditis elegans Half transporter
           (pgp related)protein 6 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 96  HIVMMVAAMVTQGRTIPVRCHRLALLRAKSML 191
           H+V      V +GRT+ +  HRL+ +R+  M+
Sbjct: 601 HMVQEALNNVMKGRTVLIIAHRLSTIRSAQMI 632


>Z46794-1|CAA86782.1|  367|Caenorhabditis elegans Hypothetical
           protein R06F6.1 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 29  SHASSCNS-YSPCGKSPET---RRKAPHRYDGSSDGDAGEDNSRTLSSPS 166
           S+AS+ N   SP  + PET    RKAP    G    + G D+S   SSPS
Sbjct: 147 SNASTINEGASPSKRRPETGKSNRKAPR---GRLFTNGGSDSSSVASSPS 193


>Y10114-1|CAA71200.1|  367|Caenorhabditis elegans histone RNA
           hairpin-binding protein protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 29  SHASSCNS-YSPCGKSPET---RRKAPHRYDGSSDGDAGEDNSRTLSSPS 166
           S+AS+ N   SP  + PET    RKAP    G    + G D+S   SSPS
Sbjct: 147 SNASTINEGASPSKRRPETGKSNRKAPR---GRLFTNGGSDSSSVASSPS 193


>AB060649-1|BAB83255.1|  367|Caenorhabditis elegans histone
           stem-loop binding proteinCDL-1 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 29  SHASSCNS-YSPCGKSPET---RRKAPHRYDGSSDGDAGEDNSRTLSSPS 166
           S+AS+ N   SP  + PET    RKAP    G    + G D+S   SSPS
Sbjct: 147 SNASTINEGASPSKRRPETGKSNRKAPR---GRLFTNGGSDSSSVASSPS 193


>Z77135-4|CAB00877.2|  320|Caenorhabditis elegans Hypothetical
           protein T16A9.3 protein.
          Length = 320

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 15  FNFRGHMRVLVTHTHPVESPRRRGGKRH 98
           ++F+  MR++V   HP++    R G+ H
Sbjct: 262 YHFQDFMRIMVNENHPLKERFFRRGEHH 289


>Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical
           protein F57B7.1a protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 38  SSCNSYSPCGKSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPSIAQSKVNVEGLR 202
           + C+S +PC   P +   +P     S + ++ ++ S  L+S S   S  + +G+R
Sbjct: 451 TGCDSITPCSPMPTSFPSSPLPPIRSGEDESTDETSHLLNS-SGPNSTASADGIR 504


>Z72504-6|CAA96604.2|  906|Caenorhabditis elegans Hypothetical
           protein C29E6.4 protein.
          Length = 906

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 11  PVQLSGSHASSCNSYSPCGKSPETRRKAPHRYDGSSDGDAGED 139
           P  +  + ++   +YS   KS  T      R+DGSS  ++ ED
Sbjct: 458 PTSIRSTSSARPTTYSTTVKSSTTTVSTSTRHDGSSSSESLED 500


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 77  PGTFHRVSMSYKNSHVT-PKVELV 9
           P TF+RV +S KNSH   P  E+V
Sbjct: 721 PKTFYRVRISGKNSHADGPASEVV 744


>Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical
           protein ZK938.3 protein.
          Length = 660

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 45  VTHTHPVESPRRRGGKRHIVMMVAAMVTQGRTIPVRCHRLALLRAKSMLKGFGSNEMGLT 224
           VTH H +       GKR I  +V  +  Q + + V   R+ +++     KG+   ++ L 
Sbjct: 498 VTHVH-ISKNVVNMGKRKIYTVVKKLAKQEKRLLVSIDRIDVMKKDPKHKGYTHRQILLR 556

Query: 225 RF 230
            F
Sbjct: 557 NF 558


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 17  QLSGSHASSCNS-YSPCGKSPETRRK 91
           Q   S+  SC S YSPCG+    RRK
Sbjct: 353 QAPQSNQCSCQSNYSPCGQGQCCRRK 378


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 17  QLSGSHASSCNS-YSPCGKSPETRRK 91
           Q   S+  SC S YSPCG+    RRK
Sbjct: 353 QAPQSNQCSCQSNYSPCGQGQCCRRK 378


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 11   PVQLSGSHASSCNSYSPCGKSPETRR-KAPHRYDGSSDGDAGE 136
            PVQ S S ++SC +   C KS  + R +      G  DG+  E
Sbjct: 1481 PVQCSNSGSNSCPAGYKCQKSTLSNRFQCCSSVSGGGDGEEEE 1523


>Z81086-8|CAB54255.1|   57|Caenorhabditis elegans Hypothetical
          protein F53B6.8 protein.
          Length = 57

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 74 GTFHRVSMSYKNSHVTPKVELVG 6
          GTF  +S+S+ +SH  P+  L+G
Sbjct: 15 GTFAGISVSFSHSHEFPRHGLLG 37


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 11  PVQLSGSHASSCN-SYSPCGKSPETRRK 91
           P Q    ++ SC  +YSPCG     +RK
Sbjct: 398 PCQTQSVNSCSCQQNYSPCGNGQCCKRK 425


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 11  PVQLSGSHASSCN-SYSPCGKSPETRRK 91
           P Q    ++ SC  +YSPCG     +RK
Sbjct: 398 PCQTQSVNSCSCQQNYSPCGNGQCCKRK 425


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 8   QPVQLSGSHASSCNSYSPCGKSPETRRKAPHRYDGSSDGDAGEDNS 145
           +P+ +SG H S    +SP  KS    +     ++G  D   G  +S
Sbjct: 22  KPIMISGGHPSQDQGHSP--KSESFGQSVTTAFNGMVDNLVGSPSS 65


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 68  KSPETRRKAPHRYDGSSDGDAGEDNSRTLSSPS 166
           K  ++R+ +     GSSD D+  D+S +  S S
Sbjct: 390 KVEKSRKSSSESSSGSSDSDSSSDSSSSSDSSS 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,303,048
Number of Sequences: 27780
Number of extensions: 118418
Number of successful extensions: 401
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)