Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b17
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0808 + 11412981-11413259                                         29   1.6  
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    28   2.8  
08_01_0034 - 253972-254916                                             27   3.7  
06_01_1160 - 9868340-9868360,9868639-9868986                           27   4.9  
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374...    27   4.9  
03_05_0733 - 27241021-27241767                                         27   4.9  
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    26   8.6  
01_05_0168 - 18865821-18866843                                         26   8.6  

>03_02_0808 + 11412981-11413259
          Length = 92

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 109 IRNLLRAN-NQIFKNVAQQRNMSVICTPPRNKVSRG 213
           +R +LR N + +F    QQR M  +  PPR K   G
Sbjct: 50  VRKVLRENQDMVFIQQPQQREMGGLIMPPRGKTKLG 85


>07_03_0997 -
           23203166-23203330,23203627-23203693,23203771-23203862,
           23204820-23204956,23205050-23205116,23205212-23205278,
           23205356-23205441,23206061-23206153,23206337-23206522,
           23207316-23207372,23207455-23207582,23207662-23207731,
           23207815-23207950,23208378-23208529,23208606-23208680,
           23208765-23208929,23209063-23209128,23209229-23209333,
           23209929-23210132,23210462-23211715
          Length = 1123

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -3

Query: 315 IILLLVAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSA----DNAHVPLLSDI 148
           +  +L+ ++LDV+  P W +       AGE ++         R A     NA VP+ S++
Sbjct: 330 LFAVLMQMLLDVEDDPAWHTAETEDEDAGEGNNYGVAQECLDRLAIAIGGNAIVPIASEL 389

Query: 147 L 145
           L
Sbjct: 390 L 390


>08_01_0034 - 253972-254916
          Length = 314

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -3

Query: 285 DVDQHPGWDSRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLSDILKDLVVSAK 121
           D+D+     +  AH     E  HL  G L    S   A +  L D+  D+V   K
Sbjct: 251 DLDRVVATGTGYAHREDMAERAHLVKGCLAMLSSGAEAVIAELDDLFDDIVEGRK 305


>06_01_1160 - 9868340-9868360,9868639-9868986
          Length = 122

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 124 RANNQIFKNVAQQRNMSVICTPPRNK 201
           +A  Q+ +  A  RNM VICT P  K
Sbjct: 84  QAGRQVGRRPASIRNMRVICTTPNYK 109


>03_06_0084 +
           31536286-31536718,31536907-31536983,31537380-31537428,
           31537778-31538048,31540876-31541104,31541511-31541750
          Length = 432

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 240 HQAGEEDHLTSGNL 199
           HQ  EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365


>03_05_0733 - 27241021-27241767
          Length = 248

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 300 VAVMLDVDQHPGWDSRPAHHHQAGEEDHLTSGNLVS 193
           +AV  DV    G+ +R  H H     DHL  G+LV+
Sbjct: 56  LAVRPDVFSVAGFANRTGHWHALRGNDHLFRGDLVA 91


>03_05_0816 +
           27928812-27930059,27931007-27931111,27931197-27931262,
           27931337-27931501,27931671-27931745,27931829-27931983,
           27932234-27932369,27932454-27932523,27932602-27932729,
           27932838-27932894,27933326-27933511,27934031-27934123,
           27934488-27934573,27934668-27934734,27934873-27934939,
           27935016-27935152,27935618-27935709,27935849-27935915,
           27936058-27936078
          Length = 1006

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 315 IILLLVAVMLDVDQHPGWDSRPAHHHQAGE 226
           +  +L+ ++LDV   P W +  +    AGE
Sbjct: 320 LFAVLMTMLLDVQDEPAWHAAVSEEEDAGE 349


>01_05_0168 - 18865821-18866843
          Length = 340

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 232 GLMVVGWSAIPAWVL-VNIKHYRDK 303
           G+ + GW+ +P W L + + HY  K
Sbjct: 161 GITMKGWAVVPRWKLRLRVSHYLRK 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,997,300
Number of Sequences: 37544
Number of extensions: 167005
Number of successful extensions: 371
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)