Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b17
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   2.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   2.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   4.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 225 PRRPDGGGLVCYPSLGVGQHQALPRQAIKLSQKN 326
           PRR +   L C P L  GQ Q+ P+   +  + N
Sbjct: 341 PRRKNNCPLHCKPEL--GQSQSSPKFVARREESN 372


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 252 VCYPSLGVGQHQALPRQAIKLSQKNM 329
           +C P L +    A  +QA+++S  N+
Sbjct: 429 ICKPKLKIADLSAHDKQAVRMSALNV 454


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 6   TSLNH*LIDFHCQFYIKKFETTLR 77
           +S++  L+DF   FY ++F T  R
Sbjct: 48  SSVSEVLMDFTLDFYFRQFWTDPR 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,087
Number of Sequences: 438
Number of extensions: 1853
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)