Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b16
         (655 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010124-1|AAQ22593.1|  594|Drosophila melanogaster AT11375p pro...    29   5.5  
AE014298-3068|AAF50869.1|  594|Drosophila melanogaster CG10998-P...    29   5.5  

>BT010124-1|AAQ22593.1|  594|Drosophila melanogaster AT11375p
           protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 300 LTTDFVC*RKMSSIVTIKNCLRKKIISYAVCL*A-FCSIYFN*YKPVYFGH 151
           L  D++  RKMS +VT K  LR KI + +  L +  CS  F+ +K   +GH
Sbjct: 542 LNKDYITLRKMSQLVTTKR-LRTKISNRSSFLSSPNCSPNFSEFKKEEYGH 591


>AE014298-3068|AAF50869.1|  594|Drosophila melanogaster CG10998-PA,
           isoform A protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 300 LTTDFVC*RKMSSIVTIKNCLRKKIISYAVCL*A-FCSIYFN*YKPVYFGH 151
           L  D++  RKMS +VT K  LR KI + +  L +  CS  F+ +K   +GH
Sbjct: 542 LNKDYITLRKMSQLVTTKR-LRTKISNRSSFLSSPNCSPNFSEFKKEEYGH 591


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,900,198
Number of Sequences: 53049
Number of extensions: 467150
Number of successful extensions: 792
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)