Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b16
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-2|CAA91421.1|  238|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop heli...    28   6.7  

>Z66524-2|CAA91421.1|  238|Caenorhabditis elegans Hypothetical
           protein T13H5.5 protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 545 SVTFVGVKMISI*VYQWY*NWYDEPGFPL 459
           ++TF GV+  +    QWY +W DEPG P+
Sbjct: 167 TITF-GVEFRNFDYRQWYKSWTDEPGKPV 194


>U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop helix
           protein 26 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 452 KHLTGTQVHHTSFSTTDIPI 511
           K L+G Q+HH SFST+  PI
Sbjct: 60  KLLSGIQLHHESFSTSPGPI 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,235,259
Number of Sequences: 27780
Number of extensions: 260102
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)