Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b16
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.1  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   2.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   7.9  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 427 YNKVHHSLEAFNGNPGSSYQF*YH*YTYMEIIFTPTKV 540
           YN  +++   +N N  ++Y+  Y+   Y+E I  P  V
Sbjct: 330 YNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPV 367


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 430 NKVHHSLEAFNGNPGSSYQF*YH*YTYMEIIFTPTKV 540
           NK  H+   +N N  ++Y+  Y+   Y+E +  P  V
Sbjct: 87  NKTIHNNNNYNNNNYNNYKKLYYNINYIEQVPVPIPV 123


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 427 YNKVHHSLEAFNGNPGSSYQF*YH*YTYMEIIFTPTKV 540
           YN  +++   +N N  ++Y+  Y+   Y+E I  P  V
Sbjct: 96  YNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPV 133


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 97  TTFNLDILHINISIILNKLHETDLFNGLGNVI 2
           T+FN  + HI     LN L + + +   GN++
Sbjct: 300 TSFNGMLSHILQKTTLNMLTQVECYKYYGNIM 331


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 310 EPCNNLKFTVT*LSLEIISVH 372
           EPCN +  ++T L   I +VH
Sbjct: 6   EPCNKILTSLTRLRRHIQNVH 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,187
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)