Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b15
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    25   0.62 
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    24   1.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.8  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    21   7.7  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   7.7  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 512 PKDNSNTTNAMLFINSVMSNRLKNVIYIAQSLAVVVRDIFVYLFVTVCIQSVY 670
           PKDN     A+L I   + N L N+  +A S+      +FV    ++CI   Y
Sbjct: 202 PKDNHFL--ALLDIVHGVHNELCNLCQVANSIYGFQNFLFVLSTFSICITQFY 252


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 579 LSLLDITLFMNNIAFVVFEL 520
           LS + +T F+NN  F++F++
Sbjct: 285 LSYIILTSFLNNFYFIIFQV 304


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 269 PETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHKY 391
           P+T+A  G P+   +    +  R PR   T+ + L L  K+
Sbjct: 94  PQTSAPTGPPIVRCALRKHKPNRKPRTPFTTQQLLALEKKF 134


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 116 SCARGSPVRTVDSSQDIEIP 175
           +C RG  VRT+++ Q +  P
Sbjct: 9   ACMRGGSVRTLNNYQQVMEP 28


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 137 PEILGHNCRR 108
           PEI+G NC R
Sbjct: 57  PEIIGKNCER 66


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 464 INLLYLSKG*NYSIFATKMTLIPCRICVLRVRFSMKF 354
           INLL   +  N   FA KM  + C I  L + F+  F
Sbjct: 176 INLLLTEQLQNRRFFAKKMEGLVCSIKELNMIFNEFF 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,973
Number of Sequences: 336
Number of extensions: 3564
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)