Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30b15
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0582 + 4172154-4173614 32 0.40
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 31 1.2
07_03_1557 - 27699675-27699972,27700546-27700630,27700741-277008... 31 1.2
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 30 2.2
07_03_0393 - 17630097-17630367,17630483-17630709 29 2.8
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 29 3.8
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271... 29 5.0
04_04_0651 - 26952360-26952437,26952923-26952999,26954072-269543... 29 5.0
11_06_0201 + 21178784-21179047,21179519-21180064 28 6.6
10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283 28 6.6
07_03_0301 + 16449586-16449671,16450028-16451135 28 6.6
>06_01_0582 + 4172154-4173614
Length = 486
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3
Query: 315 GEGSSTGSPSPAAVSGPNIVKGS 247
G+GSS+G SPA+VSGP+ GS
Sbjct: 16 GDGSSSGGSSPASVSGPSDSDGS 38
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 110 ADSCARGSPVRTVDSSQDIEIPA--TAAHQDESGVRINDSIVSDHTSQEPLTIFGPETAA 283
A S ++ V + D+ + I I +++ E G+ ++ V DHT +E E A
Sbjct: 775 AKSNSQSEQVLSNDTERGIAIQTEQVSSNDTEMGIATSEPTVPDHTDEEAGESEADEDAP 834
Query: 284 GDGEPVDDP 310
G+ E + DP
Sbjct: 835 GEKEEIIDP 843
>07_03_1557 -
27699675-27699972,27700546-27700630,27700741-27700847,
27700942-27701135,27701252-27701368,27701466-27701631,
27701723-27701887,27702185-27703428
Length = 791
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +2
Query: 278 AAGDGEPVDDPSPFPSRAQRT-PRNSRTSLKTLLLVHKYDMVLMSFLLQIYYSFNPLTNT 454
AAGDG + PSP P A+ PR ++ +T+ HK ++++ L I ++
Sbjct: 365 AAGDGLVLAPPSPAPRIAKWVPPREAKRQGETIAKGHKNYELMLNLQLGIRHAVGKQGPV 424
Query: 455 TNLFLPIFIYSVTKIIW--FPPKDNSNT 532
T L L + + +W FPP+ + T
Sbjct: 425 T-LDLKSSAFDPKEKVWTKFPPEGSKYT 451
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 152 SSQDIEIPATAAHQDESGVRINDSIVS 232
SS D+ +PA+ H+D+ GVR +++ VS
Sbjct: 288 SSPDVHVPASPLHKDDHGVRPSNAGVS 314
>07_03_0393 - 17630097-17630367,17630483-17630709
Length = 165
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 330 ARDGKGEGSSTGSPSPAAVSGPNIV 256
A +G+GEGSS GS AA +G +I+
Sbjct: 30 AEEGEGEGSSGGSGKAAAAAGSSIL 54
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 176 ATAAHQDESGVRINDSIVSDHTSQEPLTI 262
+ A ++SG++I D+ V D +SQEPL +
Sbjct: 313 SNAMVSEDSGIQIVDTFVPDPSSQEPLLV 341
>11_06_0713 +
26524984-26525276,26526008-26526434,26526550-26527171,
26528059-26528099,26528181-26528249,26528565-26528665,
26529300-26529378,26529955-26530053,26530129-26530197,
26530326-26530375,26530482-26530548,26531031-26531125,
26534469-26534856
Length = 799
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 84 GFNF*LEKAPTVVPEDLRSGQLILAKISRFQLQQ--LIRMKVEYALTTL*FLTTPHKNL* 257
G N+ +P +V DL+S L++ K ++ L R+K+E LTT TP
Sbjct: 547 GMNYLHNSSPPIVHRDLKSSNLLVDKNWTVKVADFGLSRLKLETFLTTKTGKGTPQWMAP 606
Query: 258 QYSVLRQQQAMENLSMTL 311
+ VLR + + EN + L
Sbjct: 607 E--VLRNEPSNENYGVIL 622
>04_04_0651 -
26952360-26952437,26952923-26952999,26954072-26954300,
26954926-26955537
Length = 331
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 272 ETAAGDGEPVDDPSPFPSRAQRTPRNSRTSLK 367
+T + DGE V DPSP + R P +S++
Sbjct: 55 DTGSTDGECVSDPSPGRASTNRPPEEKESSVE 86
>11_06_0201 + 21178784-21179047,21179519-21180064
Length = 269
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -3
Query: 285 PAAVSGPNIVKGSCEVWSETIESLMRTPLXXXXXXXXXXXXSWLESTVLTGDPRAQLSAL 106
P+ P SC V +ET E+ R P+ +E+ V G RA+L L
Sbjct: 165 PSRERNPRAFLASCRVEAETAEAPRRVPVLAAEFLASSWWRKKMEARVFGGKKRAELREL 224
>10_08_0367 - 17236838-17236852,17237051-17237152,17237246-17238283
Length = 384
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -3
Query: 393 SYLCTKSKVFNEVREFRGVLCARDGKGEGSSTGSPSPAAVS 271
++L + +K N+ RE R +R G GEG++T + + AAV+
Sbjct: 335 TFLTSPAKATNQEREARA--SSRMGGGEGATTAAAAAAAVA 373
>07_03_0301 + 16449586-16449671,16450028-16451135
Length = 397
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 212 INDSIVSDHTSQEPLTIFGPETAAGDGEPVDDPSP 316
IND ++ D+ TI+ ET G GEP SP
Sbjct: 79 INDDVIDDNDQIVTGTIYEHETPPGGGEPRHPLSP 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,094,265
Number of Sequences: 37544
Number of extensions: 345066
Number of successful extensions: 1163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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