Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b09
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.5  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   8.6  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = -3

Query: 267 SIRYLIDLFFIVFHDHN----AVAVALIGCYHN 181
           S+ +L D F   F DHN     VA  L G Y N
Sbjct: 81  SVDFLFDNFSAAFQDHNIEITEVAPVLPGNYAN 113


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = -3

Query: 267 SIRYLIDLFFIVFHDHN----AVAVALIGCYHN 181
           S+ +L D F   F DHN     VA  L G Y N
Sbjct: 314 SVDFLFDNFSAAFQDHNIEITEVAPVLPGNYAN 346


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = -3

Query: 267 SIRYLIDLFFIVFHDHN----AVAVALIGCYHN 181
           S+ +L D F   F DHN     VA  L G Y N
Sbjct: 314 SVDFLFDNFSAAFQDHNIEITEVAPVLPGNYAN 346


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 214 SIMIMKDDEEKIYKISDR 267
           S++  K+DEE  +++SDR
Sbjct: 18  SLLSKKEDEEVEHRLSDR 35


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 347 KCVMGMNWGPQLQPVSHVVISQSILGAVLPTL*MCS 454
           +C+ G+ W  ++  V  V    + L  V+P   +C+
Sbjct: 122 QCLCGVGWTGKVCDVEMVSCKDAALRKVVPLKKLCN 157


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 160 LRDIVSLYLTFCSRIT 113
           +RD+  L L  CSR T
Sbjct: 438 IRDVYFLRLAICSRFT 453


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 341 CIKCVMGMNWGPQLQPVS 394
           C + +  M +GPQ QP S
Sbjct: 69  CKRKIQFMPYGPQQQPAS 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,963
Number of Sequences: 336
Number of extensions: 3061
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)