Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b09
         (641 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    26   1.2  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    25   2.0  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   2.0  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   8.2  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 311 LLNILQKIFSCIKCVMGMNWGPQLQPVSHVVISQSILGAVL 433
           LL ILQ  F+  + +   + GP ++ VS  V   SILG  L
Sbjct: 615 LLRILQSYFTDRELIFNTSEGPVVRCVSAGVPQGSILGPTL 655


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 490  YFMDYLASSVKVPFAAHGYGGY 555
            Y  D+  + VK P + HGY G+
Sbjct: 1334 YDQDFQTADVKHPKSRHGYSGF 1355


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 311 LLNILQKIFSCIKCVMGMNWGPQLQPVSHVVISQSILGAVL 433
           LLNI+   F   K +   + GP  + +S  V  +SILG  L
Sbjct: 610 LLNIIGSYFEERKLIYNTSAGPVERHISAGVPQESILGPTL 650


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 592 LFYGNDP*YSNLDIHHNHELQMVPS 518
           L+YG  P YSNL I     +  VP+
Sbjct: 229 LWYGKQPDYSNLHIFGCSAIVHVPA 253


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,055
Number of Sequences: 2352
Number of extensions: 12019
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)