Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b09
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80442-1|AAB37663.1|  202|Caenorhabditis elegans Proteasome beta...   136   2e-32
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    63   1e-10
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    60   1e-09
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    51   6e-07
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    51   6e-07
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    48   6e-06
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    35   0.043
Z54270-8|CAA91029.2|  301|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>U80442-1|AAB37663.1|  202|Caenorhabditis elegans Proteasome beta
           subunit protein 4 protein.
          Length = 202

 Score =  136 bits (328), Expect = 2e-32
 Identities = 70/164 (42%), Positives = 105/164 (64%), Gaps = 3/164 (1%)
 Frame = +1

Query: 154 LLGIQCNDFVMIAADQSNSHSIMIMKDDE-EKIYKISDRLVMGVIGDSGDTNQFAEYIAK 330
           L+GI   ++V++AAD++      I+ D E +K Y++  +L M  IG+ GD  QF ++  +
Sbjct: 7   LVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKR 66

Query: 331 NIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGY-DKENGPELYFMDYL 507
           N+QLY +RNGYE+ PS A  F RR++AE LRS   Y V+VL+GGY DKE+   L  +DYL
Sbjct: 67  NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL 126

Query: 508 ASSV-KVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCV 636
           A+ + + P+   G+ G    +IMDR +KKD TE E   ++ KC+
Sbjct: 127 ANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCI 170


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 37/153 (24%), Positives = 78/153 (50%)
 Frame = +1

Query: 181 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 360
           +++ AD   +   +I     EK++K+++ +     G + D +Q  + ++ N++L ++  G
Sbjct: 58  LVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTG 117

Query: 361 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 540
            +     A    +++L  Y      Y   +L+GG D   GP LY      +++  PF A 
Sbjct: 118 RKARVITALRQAKQHLFNYQGYIGAY---LLIGGVDP-TGPHLYMCSANGTTMAFPFTAQ 173

Query: 541 GYGGYLSLSIMDRYHKKDATETEAYDILKKCVQ 639
           G G Y +++I++R  K D T+ EA  ++++ ++
Sbjct: 174 GSGSYAAITILERDFKVDMTKDEAEKLVQRALE 206


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 38/144 (26%), Positives = 66/144 (45%)
 Frame = +1

Query: 181 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 360
           +++A D   S    I      KI  I DR+V  + G + D   +   +AK   LY++R  
Sbjct: 83  IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142

Query: 361 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 540
             +  SAA+ +    L  Y        V  ++ GYDK+ GP+++ +D      ++   + 
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLS--VGSMVAGYDKK-GPQIFKVDSEGDRCQLKVCSV 199

Query: 541 GYGGYLSLSIMDRYHKKDATETEA 612
           G G   +  I+D ++K   T+ EA
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEA 223


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +1

Query: 163 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 339
           I   +F ++A+D +   + I I+  D EKI  ++D +++   G  GD  Q  + +   + 
Sbjct: 57  ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116

Query: 340 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 519
            Y+     ++     A    RNL  Y R   PY+   ++ G D+     ++  D +    
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174

Query: 520 KVPFAAHGYGGYLSLSIMD 576
           ++ ++A G    + +  +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
 Frame = +1

Query: 163 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 339
           I   +F ++A+D +   + I I+  D EKI  ++D +++   G  GD  Q  + +   + 
Sbjct: 57  ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116

Query: 340 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 519
            Y+     ++     A    RNL  Y R   PY+   ++ G D+     ++  D +    
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174

Query: 520 KVPFAAHGYGGYLSLSIMD 576
           ++ ++A G    + +  +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
 Frame = +1

Query: 157 LGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNI 336
           LGI  ++ +++AA++ N H ++      EK+Y++SD +   V G + D N    ++    
Sbjct: 35  LGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWA 94

Query: 337 QLYKMRNGYELGPSAAASFTRRNLAEY--LRSSTPYFVNVLMGGYDKENGPELYFMD 501
             Y+   G E+               Y  +    P+ V++L  G+DK  G +LY  D
Sbjct: 95  ASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSD 151


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
 Frame = +1

Query: 142 NLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEY 321
           N Q  +G++  D V++A +   S    ++ DD+ K+ +IS  +     G   D     + 
Sbjct: 30  NGQPSVGLRAKDGVVLATENVGS----VLTDDQPKVEQISKHIGCVYSGMGPDFRILVKK 85

Query: 322 IAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSS--TPYFVNVLMGGYDKENGPELYF 495
             K    Y+M  G E+      +     + EY +S    P+  ++L+ G+DK  G  L F
Sbjct: 86  ARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLF 145


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 35.1 bits (77), Expect = 0.043
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 5/179 (2%)
 Frame = +1

Query: 118 YDCKMSNINLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSG 297
           Y  K  N      + ++  D  +IA  +    S+ I+ D    +Y+IS  +    IG   
Sbjct: 27  YAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL-IVADTVTSVYQISQSVGCCAIGMIP 85

Query: 298 DTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYF---VNVLMGGYD 468
           D     +        +K +NGY++ P    +    +L +Y   +         +L   YD
Sbjct: 86  DAKFQIKRAQGEAASWKYKNGYDM-PCELLAKKMADLNQYYTQNAEMRSLGCALLFISYD 144

Query: 469 KENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKK--DATETEAYDILKKCVQ 639
            E GPE+Y +D       +   + G     + S +++  KK  + T TEA ++  + +Q
Sbjct: 145 DEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQ 203


>Z54270-8|CAA91029.2|  301|Caenorhabditis elegans Hypothetical
           protein F11C1.4 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
 Frame = +1

Query: 271 VMGVIGDSGDTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRN---LAEYLRSSTPYF 441
           V+G  G+ G    F   + +N+   + R G         + +  N   L   LR S  + 
Sbjct: 24  VLGNPGNDGFYTDFGRRLIRNLIAREERLGTRRVQFVFYTLSHLNHVLLPTSLRCSESHK 83

Query: 442 VNVLMGGYDKENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKKD 594
           VN      D+      +  +YL    +V    HG G Y+ LSI+  Y K D
Sbjct: 84  VNERFSLADQVQHKLDFVKEYLPRGNRVYMFGHGDGAYMLLSILP-YIKDD 133


>U58727-2|AAB00582.2|  462|Caenorhabditis elegans Hypothetical
           protein D1005.2 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 568 YSNLDIHHNHELQMVPSRLMLNSP*NTVQVHFLYHNHP 455
           +S   +HHNHEL   P   +  S  N+V+V  L   HP
Sbjct: 372 HSTFKVHHNHELGAPPVISLDPSIYNSVEVVDLKFPHP 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,209,815
Number of Sequences: 27780
Number of extensions: 273863
Number of successful extensions: 681
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)