Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30b03
(505 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 179 4e-45
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 179 4e-45
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 179 4e-45
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 179 4e-45
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 122 9e-28
DQ013303-1|AAY67796.1| 532|Homo sapiens RAB11-FIP2 long isoform... 30 4.0
BC075074-1|AAH75074.1| 512|Homo sapiens RAB11 family interactin... 30 4.0
BC075073-1|AAH75073.1| 512|Homo sapiens RAB11 family interactin... 30 4.0
AY037299-1|AAK68635.1| 512|Homo sapiens nRip11 protein. 30 4.0
AB023158-1|BAA76785.2| 533|Homo sapiens KIAA0941 protein protein. 30 4.0
D25538-1|BAA05021.2| 1088|Homo sapiens KIAA0037 protein. 30 5.3
BC126271-1|AAI26272.1| 1080|Homo sapiens adenylate cyclase 7 pro... 30 5.3
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 179 bits (436), Expect = 4e-45
Identities = 87/105 (82%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 436
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 108
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 179 bits (436), Expect = 4e-45
Identities = 87/105 (82%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 436
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 108
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 179 bits (436), Expect = 4e-45
Identities = 87/105 (82%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 436
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 108
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 179 bits (436), Expect = 4e-45
Identities = 87/105 (82%), Positives = 93/105 (88%), Gaps = 1/105 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 436
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 108
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 122 bits (293), Expect = 9e-28
Identities = 55/58 (94%), Positives = 57/58 (98%)
Frame = +2
Query: 263 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEP 436
KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEP
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEP 58
>DQ013303-1|AAY67796.1| 532|Homo sapiens RAB11-FIP2 long isoform
protein.
Length = 532
Score = 30.3 bits (65), Expect = 4.0
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 278 MPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPRCXG*GD 457
+P K + +K P E S+TWD M + + I++ ++ K+ +++ R G D
Sbjct: 311 LPQKFATLPRKKNPFEESSETWDS-SMNLFSKPIEIRKENKREKR-EKVSLFERVTGKKD 368
Query: 458 HRR 466
RR
Sbjct: 369 SRR 371
>BC075074-1|AAH75074.1| 512|Homo sapiens RAB11 family interacting
protein 2 (class I) protein.
Length = 512
Score = 30.3 bits (65), Expect = 4.0
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 278 MPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPRCXG*GD 457
+P K + +K P E S+TWD M + + I++ ++ K+ +++ R G D
Sbjct: 311 LPQKFATLPRKKNPFEESSETWDS-SMNLFSKPIEIRKENKREKR-EKVSLFERVTGKKD 368
Query: 458 HRR 466
RR
Sbjct: 369 SRR 371
>BC075073-1|AAH75073.1| 512|Homo sapiens RAB11 family interacting
protein 2 (class I) protein.
Length = 512
Score = 30.3 bits (65), Expect = 4.0
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 278 MPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPRCXG*GD 457
+P K + +K P E S+TWD M + + I++ ++ K+ +++ R G D
Sbjct: 311 LPQKFATLPRKKNPFEESSETWDS-SMNLFSKPIEIRKENKREKR-EKVSLFERVTGKKD 368
Query: 458 HRR 466
RR
Sbjct: 369 SRR 371
>AY037299-1|AAK68635.1| 512|Homo sapiens nRip11 protein.
Length = 512
Score = 30.3 bits (65), Expect = 4.0
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 278 MPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPRCXG*GD 457
+P K + +K P E S+TWD M + + I++ ++ K+ +++ R G D
Sbjct: 311 LPQKFATLPRKKNPFEESSETWDS-SMNLFSKPIEIRKENKREKR-EKVSLFERVTGKKD 368
Query: 458 HRR 466
RR
Sbjct: 369 SRR 371
>AB023158-1|BAA76785.2| 533|Homo sapiens KIAA0941 protein protein.
Length = 533
Score = 30.3 bits (65), Expect = 4.0
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 278 MPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPRCXG*GD 457
+P K + +K P E S+TWD M + + I++ ++ K+ +++ R G D
Sbjct: 332 LPQKFATLPRKKNPFEESSETWDS-SMNLFSKPIEIRKENKREKR-EKVSLFERVTGKKD 389
Query: 458 HRR 466
RR
Sbjct: 390 SRR 392
>D25538-1|BAA05021.2| 1088|Homo sapiens KIAA0037 protein.
Length = 1088
Score = 29.9 bits (64), Expect = 5.3
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 64 KSCLSRPEFNKQHGSRC-SVRQRHRETPGRGL-PYSPHQDHSYFSQCALTREGL 219
+ +S E + +G R SV QRHR TP R + P +D SY + EGL
Sbjct: 511 RESVSSGETHVPNGRRPKSVPQRHRRTPDRSMSPKGRSEDDSYDDEMLSAIEGL 564
>BC126271-1|AAI26272.1| 1080|Homo sapiens adenylate cyclase 7
protein.
Length = 1080
Score = 29.9 bits (64), Expect = 5.3
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 64 KSCLSRPEFNKQHGSRC-SVRQRHRETPGRGL-PYSPHQDHSYFSQCALTREGL 219
+ +S E + +G R SV QRHR TP R + P +D SY + EGL
Sbjct: 503 RESVSSGETHVPNGRRPKSVPQRHRRTPDRSMSPKGRSEDDSYDDEMLSAIEGL 556
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,561,594
Number of Sequences: 237096
Number of extensions: 1786821
Number of successful extensions: 3578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3578
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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