Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b02
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   34   0.099
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   33   0.23 
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       29   2.8  
SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   4.9  
SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)                     27   8.6  

>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 240 SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 416
           +F  +P  ++A +  L   GF +   DD V C  C+  +K W  D+    +H    P C
Sbjct: 141 TFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREFYPDC 199


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 297 GFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 416
           GF Y    D V C  C   ++NW  D+     H   SP+C
Sbjct: 156 GFYYLGDQDSVKCYKCGVALRNWEPDDLPWVEHEKWSPHC 195


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 389 IFNTLVFGPIFYFCFTILAHNVIVDLIVFK 300
           IFNT +  PI+Y  FT+L   +I   I+FK
Sbjct: 485 IFNTSLVTPIYYVMFTLL--TIIASAILFK 512


>SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 467 GNVVAKRFVLSNLVGIRAIRRQGYVCIF-NTLVFGPIFYFCFTI 339
           G++V  ++V+   + +RA+R QG++ I  +TL   P +Y  + I
Sbjct: 65  GHLVIGQYVIKGTLLLRAVRYQGHLVITGSTLSIAPCYYGQYVI 108


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  TKTKLGHINVSLNQNDPNVLILTVTL 127
           TKT L  +     +NDPNVL +TV L
Sbjct: 760 TKTALSTVQCCSLENDPNVLAITVIL 785


>SB_31644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 559 KLTNVSIRDCKLDMHL-YTHLGLPSFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYS 383
           K  + S  D KLD       +    + +TA  V  SP ++CS      +QY +K+T   S
Sbjct: 519 KERSTSCTDVKLDFAADMPRMPCAVYENTARRVTGSPGNNCSLAAKPSSQYTEKLTDRES 578

Query: 382 IHSSSDQ 362
           + +  D+
Sbjct: 579 LTTRQDK 585


>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 834

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -3

Query: 506 TLGSAFFY*YSVDGNVVAKRFVLSNL--VGIRAIRRQGYVCIFNTLVFGPIFYFCFTILA 333
           T+ S+F Y  SV   +   RF  S +  +G       GY+ ++   +    FY  F ++ 
Sbjct: 357 TIASSFMYLPSVRQALGHNRFFCSKISRLGNCMSHDPGYLAVYRICLTMATFYILFAVVL 416

Query: 332 HNV 324
           +NV
Sbjct: 417 YNV 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,857,956
Number of Sequences: 59808
Number of extensions: 349295
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)