Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30b02
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical p...    28   5.7  
AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear recep...    27   7.5  
AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear recep...    27   7.5  
AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear recep...    27   7.5  
AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormo...    27   7.5  
AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormo...    27   7.5  
AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormo...    27   7.5  
AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormo...    27   7.5  
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = +3

Query: 240 SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCA 419
           + EN P  N  F + +   G K +  D + +C    +E++  +     +  +  L    A
Sbjct: 494 NIENMPSCNLKFSSFIRQEGDKTSDEDIYRIC----SEMRRTNGKVHKKMFNFELELTLA 549

Query: 420 YANKIAEHESFGDNITINAV-LVKEGRPKCVYRCMSNLQSRMDTFV 554
            +NK  E++S G N+T+N+  ++ E     +Y+   N   +   FV
Sbjct: 550 GSNKSKEYQSHGSNLTLNSERVIHEAMEIPIYQASLNKSYKNVIFV 595


>Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical
           protein C07A9.9 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +3

Query: 303 KYNQVDDHVV----CEYCEAEIKNWSEDECIEYAHVTLSPYCAY 422
           +Y  VDD V     C +C      W  D+C +  H +L  +C Y
Sbjct: 59  EYQYVDDDVPNSERCHFCMKRKGRWMGDDCSD--HSSLCKHCCY 100


>AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 574 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 482
           N   +   N +++D KLD    T+L LPSFT
Sbjct: 428 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 458


>AF273820-1|AAG15169.1|  624|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 574 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 482
           N   +   N +++D KLD    T+L LPSFT
Sbjct: 432 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 462


>AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 619

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 574 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 482
           N   +   N +++D KLD    T+L LPSFT
Sbjct: 427 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 457


>AF047660-8|AAM54167.1|  526|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform b protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 574 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 482
           N   +   N +++D KLD    T+L LPSFT
Sbjct: 334 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 364


>AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform a protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 574 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 482
           N   +   N +++D KLD    T+L LPSFT
Sbjct: 385 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 415


>AF047660-6|AAV34786.1|  659|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform d protein.
          Length = 659

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 574 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 482
           N   +   N +++D KLD    T+L LPSFT
Sbjct: 467 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 497


>AF047660-5|AAM54168.1|  733|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform c protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 574 NAAGQKLTNVSIRDCKLDMHLYTHLGLPSFT 482
           N   +   N +++D KLD    T+L LPSFT
Sbjct: 541 NNIAKYFENGALKDLKLDYETTTNLFLPSFT 571


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -2

Query: 108 STFGSFWFSDTFIWPSLVFVSALM 37
           S+FGS W++ TF+ P L+ +S+++
Sbjct: 272 SSFGSTWYALTFLGPFLMPLSSIL 295


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -2

Query: 108 STFGSFWFSDTFIWPSLVFVSALM 37
           S+FGS W++ TF+ P L+ +S+++
Sbjct: 268 SSFGSTWYALTFLGPFLMPLSSIL 291


>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical
           protein ZK512.5 protein.
          Length = 1232

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198 IAEHVFDMLLERHGSFENYPIVNTAFINSLIVNGFKYNQVDD-HVV 332
           I +HVF  +      ++  PI   A++    VN   YN +D+ HV+
Sbjct: 240 IVDHVFRTMPPPEKYYKMPPIDRVAYVFYCAVNNKPYNNIDEFHVI 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,653
Number of Sequences: 27780
Number of extensions: 266460
Number of successful extensions: 894
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)