Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc30a22
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.3  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.6  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 138  MALFSVLRLRLNKTLPDLRSSLRFYCSSTD 227
            MA+F  + L++++  P   SSL F+C + +
Sbjct: 958  MAVFVGVMLQISQDGPLAPSSLFFFCMAAE 987


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 138  MALFSVLRLRLNKTLPDLRSSLRFYCSSTD 227
            MA+F  + L++++  P   SSL F+C + +
Sbjct: 958  MAVFVGVMLQISQDGPLAPSSLFFFCMAAE 987


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 112 LMLTYFKLISFFITSSV 62
           L+ TYF  I F + SSV
Sbjct: 273 LLGTYFNCIMFMVASSV 289


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 112 LMLTYFKLISFFITSSV 62
           L+ TYF  I F + SSV
Sbjct: 273 LLGTYFNCIMFMVASSV 289


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 112 LMLTYFKLISFFITSSV 62
           L+ TYF  I F + SSV
Sbjct: 273 LLGTYFNCIMFMVASSV 289


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 112 LMLTYFKLISFFITSSV 62
           L+ TYF  I F + SSV
Sbjct: 273 LIGTYFNCIMFMVASSV 289


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 112 LMLTYFKLISFFITSSV 62
           L+ TYF  I F + SSV
Sbjct: 273 LIGTYFNCIMFMVASSV 289


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 459 CPICRDEYLVLDH 497
           CPIC   ++  DH
Sbjct: 377 CPICNKRFMRSDH 389


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,048
Number of Sequences: 336
Number of extensions: 3518
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)