Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc30a22
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 1.9
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 1.9
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 5.9
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 26 5.9
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 5.9
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.8
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 7.8
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.8
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 7.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.8
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 7.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.8
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +3
Query: 345 YGENPVWLLYRRNHKGGIPPRKTRKSCVRNGMISTGNPCPICRDEYLVLDHRNTKLLQQF 524
+G+ P + NH G + P+ T G TGN P R L ++T +LQQ
Sbjct: 496 FGQTPNAPMMAPNHTGYVHPQPTGLQRQTTGY--TGNNNPYSRP----LQSQSTGILQQ- 548
Query: 525 ISNYTGQILQPSKTG 569
+ L+P+KTG
Sbjct: 549 QQQQSAPRLEPTKTG 563
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 315 YLASKAYMHTYGENPVWLL 371
YLA ++H +G+NP W L
Sbjct: 1474 YLARSQFLHHFGKNPSWWL 1492
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 120 FLKLKKMALFSVLRLRLNKTLPDLRSSLRFYCSSTDNGPNES 245
++ LKK L + L+ R++K + +LRF + +N NE+
Sbjct: 638 WVTLKKHRLLARLKSRISKKNSKVNENLRFSLNDGENYSNET 679
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 519 QFISNYTGQILQPSKTGLCQKKHKELLVAIERAWDQGL 632
Q I + GQ+++P KT + K E+ + + +QG+
Sbjct: 255 QDIMSMMGQLMKPKKTEITDKLRGEINKVVNKYIEQGI 292
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 168 LNKTLPDLRSSLRFYCSSTDNGPNESDEQPAVDPTKDRTKVIPVEQSL 311
+NK P LR S RF+ + N ++ D + V +D T + ++ L
Sbjct: 321 VNKHPPSLRRSRRFFAKKSYNHVSDLDGEVIVMKKEDITDGVSTKKDL 368
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 226 SVDEQ*NRRDDLKSGRVLFNLKRSTLNSAIFFN 128
SV + D+L R L+NL R+ LNS + N
Sbjct: 30 SVQSSFHSYDELAFSRRLYNLPRTLLNSRYYSN 62
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 280 LSLVGSTAGCSSDSLGPLSVDEQ*NRRDDLKSGRVLFNLKRSTLNSAIFF 131
L+ V S +G SS GPLS + R D+K + +L+ +N + F
Sbjct: 625 LTAVSSNSGQSSGRPGPLSPNLNVTTRIDIKGKKGSMHLQPRDVNRKVPF 674
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 453 NPCPICRDEYLVLD 494
N CP+CR E+L +D
Sbjct: 73 NTCPLCRTEFLKVD 86
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 69 EVIKKEISLK*VNIKT*FLKLKKMALFSVLRLRLNKTLPDLRSSLRFY 212
E I KEIS +N+ ++L + LRL L K+L ++ S R Y
Sbjct: 330 ESISKEISPIAINLTLDCIRLIPTEQYYPLRLHLLKSLVNICRSTRLY 377
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 57 KFTDEVIKKEISLK*VNIKT*FLKLKKMA 143
K + IK ISL ++IKT FL +KK +
Sbjct: 307 KINRKTIKLNISLNGISIKTEFLVVKKFS 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,472
Number of Sequences: 5004
Number of extensions: 59779
Number of successful extensions: 172
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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